Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR383-201ENST00000362257 73 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 MIR544A-201ENST00000384855 91 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 U3.26-201ENST00000391236 204 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 COX6B1P7-201ENST00000430845 235 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 AC236972.1-201ENST00000433225 199 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 OR4C10P-201ENST00000434991 931 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 UBE2V1P7-201ENST00000446395 340 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 Y_RNA.653-201ENST00000459091 95 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 UQCRHP4-201ENST00000471686 272 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 RNA5SP179-201ENST00000517284 121 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 RAB9BP1-201ENST00000519581 626 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 HPRT1P3-201ENST00000539521 576 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 AC091516.1-201ENST00000549191 703 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 MIR5096-201ENST00000583713 70 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 AL627309.6-201ENST00000606857 840 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 AC093831.2-201ENST00000624393 3427 ntBASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC28AQ8IWP9 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC002543.1-201ENST00000299783 1954 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-1059P-201ENST00000363752 98 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 Y_RNA.315-201ENST00000365117 102 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-1083P-201ENST00000384022 107 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-1222P-201ENST00000384615 107 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL512633.1-201ENST00000399931 655 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 MIR937-201ENST00000401271 86 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL591034.2-201ENST00000402839 359 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL133475.1-201ENST00000404414 305 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 SEM1P1-201ENST00000506694 209 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC099522.1-202ENST00000514718 367 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 GLYCAM1-201ENST00000546596 285 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC105137.2-201ENST00000569073 466 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL050343.2-201ENST00000607338 280 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL157817.1-201ENST00000614264 790 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC084781.2-201ENST00000615568 161 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL109809.4-201ENST00000603520 2185 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AL353743.1-202ENST00000431724 1695 ntBASIC3.01□□□□□ -1.93
CCDC28AQ8IWP9 AC006026.1-201ENST00000444025 1803 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 Y_RNA.2-201ENST00000362330 96 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 U3.6-201ENST00000363622 211 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 Y_RNA.473-201ENST00000384333 102 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 U3.22-201ENST00000391120 215 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 HIST1H2APS3-201ENST00000403259 134 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 RNA5SP44-201ENST00000410446 133 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-1304P-201ENST00000411374 106 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 RPL26P29-201ENST00000415623 438 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 AC138623.1-201ENST00000418060 216 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 SAR1AP4-201ENST00000429225 591 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 AC104332.2-201ENST00000429959 156 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 RPS29P33-201ENST00000456717 146 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 RN7SL75P-201ENST00000461926 281 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 AC006445.1-201ENST00000491925 405 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 HMGN1P13-201ENST00000505795 138 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 RNU6-307P-201ENST00000516743 106 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 SCARNA11.3-201ENST00000517276 130 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 MIR4273-201ENST00000582824 84 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 RPL23AP78-201ENST00000599928 470 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 AL133255.1-201ENST00000606374 441 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 AL442067.2-201ENST00000614033 363 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 AC007792.1-201ENST00000623023 402 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 MIR3653-201ENST00000625572 110 ntBASIC3□□□□□ -1.93
CCDC28AQ8IWP9 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
CCDC28AQ8IWP9 TANK-205ENST00000405852 2155 ntTSL 5 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms