Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RAB28P5-201ENST00000427490 651 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 MTND1P28-201ENST00000435623 950 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 RPS27AP8-201ENST00000452665 445 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AC010460.2-201ENST00000509054 677 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AC010587.2-201ENST00000511727 448 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 RNA5SP481-201ENST00000516814 122 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AC104417.1-201ENST00000523974 751 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 MIR4431-201ENST00000579990 94 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 MIR4443-201ENST00000585052 53 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AL590229.1-201ENST00000603497 542 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 BNIP3P31-201ENST00000604515 566 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AC079610.2-201ENST00000604818 690 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AC098614.4-201ENST00000607601 462 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AC034229.4-201ENST00000607861 441 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AL589994.2-201ENST00000621124 579 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AC009269.6-201ENST00000621778 588 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AL590396.4-201ENST00000636779 956 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 AL442644.1-201ENST00000454390 3105 ntBASIC-0.14□□□□□ -2.43
LINC00643Q86TS7 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 MIR411-201ENST00000362239 96 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 SNORD114-6-201ENST00000364393 72 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 Y_RNA.327-201ENST00000365201 102 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 Y_RNA.510-201ENST00000384511 114 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 Z86062.1-201ENST00000406773 777 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AL451054.2-201ENST00000420896 202 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AL008629.1-201ENST00000438615 184 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AC048334.1-201ENST00000477975 159 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 RNU6-496P-201ENST00000516145 99 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 RNU6-991P-201ENST00000516168 107 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 RNU5B-3P-201ENST00000516601 115 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AL356157.2-201ENST00000605122 111 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AL391813.2-201ENST00000609113 322 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 AL133445.2-201ENST00000611191 527 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 RMST_4.1-201ENST00000616886 107 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 PCMTD1P7-201ENST00000634506 357 ntBASIC-0.15□□□□□ -2.43
LINC00643Q86TS7 ENSAP3-201ENST00000312710 333 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 SNORD114-16-201ENST00000363044 70 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 Y_RNA.245-201ENST00000364493 95 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 MIR421-201ENST00000365696 85 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 MTCO1P56-201ENST00000401674 224 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 Y_RNA.625-201ENST00000411256 107 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 RNA5SP111-201ENST00000411386 101 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC244505.5-201ENST00000443639 207 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AL606662.1-201ENST00000445763 553 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 WDR78-207ENST00000488333 613 ntTSL 3 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 RNU2-53P-201ENST00000516257 147 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AP002906.1-201ENST00000603405 233 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC107952.2-201ENST00000606048 486 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC100812.1-201ENST00000607622 580 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 RNU6ATAC35P-201ENST00000609276 444 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AL360219.1-201ENST00000610230 366 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC005858.4-201ENST00000623191 700 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 AC245060.5-201ENST00000610778 3293 ntBASIC-0.16□□□□□ -2.44
LINC00643Q86TS7 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 AF228730.1-201ENST00000397972 663 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 DHFRP6-201ENST00000401776 268 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 AC007435.1-201ENST00000421086 415 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 DAP3P1-201ENST00000441522 278 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 RAD1P2-201ENST00000446414 663 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 AC067942.3-201ENST00000512025 362 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 AF131216.2-201ENST00000512316 564 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 MTATP6P9-201ENST00000515039 680 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 RNU6-703P-201ENST00000516946 107 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 AC018630.3-201ENST00000542637 96 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 MRPS36P5-201ENST00000551909 298 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 AC073410.2-201ENST00000603240 332 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 Z69720.2-201ENST00000624755 279 ntBASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC-0.17□□□□□ -2.44
LINC00643Q86TS7 ANKRD36BP1-202ENST00000604892 1417 ntBASIC-0.18□□□□□ -2.44
LINC00643Q86TS7 RNU5E-8P-201ENST00000363502 116 ntBASIC-0.18□□□□□ -2.44
LINC00643Q86TS7 RNU6-944P-201ENST00000364023 107 ntBASIC-0.18□□□□□ -2.44
LINC00643Q86TS7 RNU6-1335P-201ENST00000365426 107 ntBASIC-0.18□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms