Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AC060766.3-201ENST00000591442 263 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AC020895.1-201ENST00000595362 272 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AL451007.1-201ENST00000595491 289 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AC020914.4-201ENST00000597690 277 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AC110741.2-201ENST00000605278 268 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AC096577.2-201ENST00000611455 153 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AL034408.1-202ENST00000636088 415 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AC241585.2-209ENST00000638217 143 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AC093908.1-201ENST00000623125 8092 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.8
USP53Q70EK8 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.83□□□□□ -1.8
USP53Q70EK8 AC018555.1-201ENST00000567548 1980 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP53Q70EK8 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP53Q70EK8 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP53Q70EK8 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP53Q70EK8 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.83□□□□□ -1.8
USP53Q70EK8 AC002546.1-201ENST00000588041 2504 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
USP53Q70EK8 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.83□□□□□ -1.8
USP53Q70EK8 RNU6-874P-201ENST00000362390 105 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 RNU6-238P-201ENST00000363313 106 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 SNORA63.7-201ENST00000365579 123 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 SNORA9-201ENST00000384215 133 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 RNU6-505P-201ENST00000384427 107 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.83□□□□□ -1.8
USP53Q70EK8 AL138878.1-201ENST00000405131 347 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 Y_RNA.592-201ENST00000410274 109 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.83□□□□□ -1.8
USP53Q70EK8 AC243964.1-201ENST00000441814 261 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 AC073910.1-201ENST00000445047 438 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 AL513124.1-201ENST00000450410 614 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 OR2AQ1P-201ENST00000451972 200 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 MTCO3P8-201ENST00000453691 755 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 CR383656.8-201ENST00000549046 145 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.83□□□□□ -1.8
USP53Q70EK8 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.83□□□□□ -1.8
USP53Q70EK8 AC104581.2-201ENST00000572227 430 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 HSPE1P7-201ENST00000604681 321 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 MTND4LP5-201ENST00000605152 292 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.83□□□□□ -1.8
USP53Q70EK8 AC103858.2-201ENST00000621471 543 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 AC097372.5-201ENST00000623665 376 ntBASIC3.83□□□□□ -1.8
USP53Q70EK8 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP53Q70EK8 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP53Q70EK8 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP53Q70EK8 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.82□□□□□ -1.8
USP53Q70EK8 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.82□□□□□ -1.8
USP53Q70EK8 FAM35DP-201ENST00000323387 2712 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.82□□□□□ -1.8
USP53Q70EK8 LINC02471-203ENST00000641941 4752 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.82□□□□□ -1.8
USP53Q70EK8 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
USP53Q70EK8 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP53Q70EK8 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP53Q70EK8 RNA5SP399-201ENST00000364003 117 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 Y_RNA.210-201ENST00000364161 110 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 RNA5SP97-201ENST00000365006 84 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.82□□□□□ -1.8
USP53Q70EK8 SNORD116-20-201ENST00000384529 92 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 Y_RNA.551-201ENST00000384661 102 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 SNORA12.2-201ENST00000391040 156 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 MTCO3P19-201ENST00000415864 321 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 BPY2DP-201ENST00000422208 265 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 AC091286.1-201ENST00000431233 461 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 AL590664.1-201ENST00000448065 339 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 HMGN2P10-201ENST00000448085 265 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.82□□□□□ -1.8
USP53Q70EK8 SNORA74D-201ENST00000516404 141 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 AC009812.2-201ENST00000517657 457 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 AC026403.1-201ENST00000518938 295 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.82□□□□□ -1.8
USP53Q70EK8 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.82□□□□□ -1.8
USP53Q70EK8 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.82□□□□□ -1.8
USP53Q70EK8 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.82□□□□□ -1.8
USP53Q70EK8 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.82□□□□□ -1.8
USP53Q70EK8 AC012603.1-201ENST00000606424 528 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 MIR6076-201ENST00000617521 113 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 AC073308.1-201ENST00000623696 305 ntBASIC3.82□□□□□ -1.8
USP53Q70EK8 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.82□□□□□ -1.8
USP53Q70EK8 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
USP53Q70EK8 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.82□□□□□ -1.8
USP53Q70EK8 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP53Q70EK8 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
USP53Q70EK8 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.82□□□□□ -1.8
USP53Q70EK8 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP53Q70EK8 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP53Q70EK8 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.81□□□□□ -1.8
USP53Q70EK8 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 AC009541.1-201ENST00000438279 2662 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.81□□□□□ -1.8
USP53Q70EK8 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP53Q70EK8 Y_RNA.276-201ENST00000364732 109 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 Y_RNA.556-201ENST00000384677 113 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 FTH1P15-201ENST00000406984 280 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 SNORA3.3-201ENST00000408712 125 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 Y_RNA.618-201ENST00000410949 107 ntBASIC3.81□□□□□ -1.8
USP53Q70EK8 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms