Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR4287-201ENST00000579398 78 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC1.43□□□□□ -2.18
FOXA1P55317 AC174048.1-201ENST00000603389 144 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 AL355297.2-201ENST00000604792 129 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 AL138963.2-201ENST00000605137 226 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 MIR15A-201ENST00000607334 83 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA1P55317 AC009233.1-201ENST00000616477 371 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA1P55317 AC138627.2-201ENST00000624202 601 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 WWP1P1-201ENST00000466609 2769 ntBASIC1.43□□□□□ -2.18
FOXA1P55317 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
FOXA1P55317 RNU6-500P-201ENST00000362349 107 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 Y_RNA.33-201ENST00000362591 102 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 RNU4-13P-201ENST00000364019 141 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 SNORA75B-201ENST00000384053 137 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 RNU1-148P-201ENST00000384472 162 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 SNORA17.3-201ENST00000391159 129 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 MTCYBP36-201ENST00000404146 440 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AL512604.1-201ENST00000404812 257 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.42□□□□□ -2.18
FOXA1P55317 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA1P55317 XKRYP1-201ENST00000423438 492 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AIMP1P2-201ENST00000425294 312 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC108667.1-201ENST00000428618 249 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 XKRYP2-201ENST00000432915 492 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 MTCYBP39-201ENST00000437562 491 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA1P55317 AL590365.1-201ENST00000450788 243 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA1P55317 FO393415.2-201ENST00000480085 343 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA1P55317 AC018437.1-201ENST00000492214 406 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA1P55317 RNU6-415P-201ENST00000516252 97 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 Y_RNA.676-201ENST00000516393 96 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 RNA5SP337-201ENST00000517007 109 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 RNU2-19P-201ENST00000517288 84 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC011979.2-201ENST00000527568 352 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AP003122.4-201ENST00000530980 758 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC118273.2-201ENST00000532092 465 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA1P55317 AC079598.5-201ENST00000547460 117 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA1P55317 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.42□□□□□ -2.18
FOXA1P55317 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA1P55317 MIR3126-201ENST00000577443 74 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.42□□□□□ -2.18
FOXA1P55317 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.42□□□□□ -2.18
FOXA1P55317 AC016727.1-205ENST00000605437 569 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC068276.1-201ENST00000605793 379 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 U4atac.1-201ENST00000618345 95 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.42□□□□□ -2.18
FOXA1P55317 AC006927.3-201ENST00000638789 384 ntBASIC1.42□□□□□ -2.18
FOXA1P55317 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
FOXA1P55317 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
FOXA1P55317 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
FOXA1P55317 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
FOXA1P55317 RNU4-1-201ENST00000363925 141 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 RNA5SP190-201ENST00000365222 118 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 Y_RNA.595-201ENST00000410403 105 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AL353621.1-201ENST00000418219 243 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AL593851.1-201ENST00000426171 157 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AL354695.1-201ENST00000427935 228 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 RPL23AP30-201ENST00000432419 501 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AL353706.1-201ENST00000436728 494 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AL512286.1-201ENST00000439244 400 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.41□□□□□ -2.18
FOXA1P55317 RN7SKP210-201ENST00000459176 261 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 SNORD13-201ENST00000459299 104 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AC140059.1-201ENST00000489238 361 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.41□□□□□ -2.18
FOXA1P55317 RNU7-51P-201ENST00000516560 62 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.41□□□□□ -2.18
FOXA1P55317 AP001372.4-201ENST00000524889 472 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AP003181.2-201ENST00000528941 181 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 OR5B19P-201ENST00000531766 928 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.41□□□□□ -2.18
FOXA1P55317 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.41□□□□□ -2.18
FOXA1P55317 AC025678.1-201ENST00000567861 338 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 MIR5697-201ENST00000578045 78 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.41□□□□□ -2.18
FOXA1P55317 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC1.41□□□□□ -2.18
FOXA1P55317 AL670379.10-201ENST00000604330 253 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AL670379.9-201ENST00000605428 253 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 AP002360.4-201ENST00000606980 481 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 MIR5739-201ENST00000619803 80 ntBASIC1.41□□□□□ -2.18
FOXA1P55317 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
FOXA1P55317 AC138393.1-203ENST00000327086 343 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 SNORD56.2-201ENST00000363242 71 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 Y_RNA.238-201ENST00000364441 102 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 RNA5SP240-201ENST00000365355 128 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 RNU6-395P-201ENST00000365662 106 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
FOXA1P55317 FTH1P15-201ENST00000406984 280 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 Y_RNA.608-201ENST00000410647 95 ntBASIC1.4□□□□□ -2.19
FOXA1P55317 RN7SKP51-201ENST00000410781 304 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 141.2 ms