Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PTPN9P43378 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
PTPN9P43378 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
PTPN9P43378 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
PTPN9P43378 RNU6-867P-201ENST00000364956 107 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 RNU6-72P-201ENST00000384285 79 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 RNU6-831P-201ENST00000384548 107 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 MIR483-201ENST00000385070 76 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 U3.37-201ENST00000408528 213 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 AC022028.1-201ENST00000412054 408 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.01□□□□□ -1.93
PTPN9P43378 AL451074.5-201ENST00000415894 435 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 NCOR1P3-201ENST00000420479 303 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 RPS29P6-201ENST00000438196 145 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.01□□□□□ -1.93
PTPN9P43378 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.01□□□□□ -1.93
PTPN9P43378 AC233279.1-201ENST00000455300 423 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 S100A11P2-201ENST00000467589 312 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.01□□□□□ -1.93
PTPN9P43378 COPS8P3-201ENST00000526024 482 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 AP000889.2-201ENST00000532684 490 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 AC100830.2-201ENST00000581636 240 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.01□□□□□ -1.93
PTPN9P43378 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.01□□□□□ -1.93
PTPN9P43378 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.01□□□□□ -1.93
PTPN9P43378 APOOP1-201ENST00000604695 592 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 MTND4LP5-201ENST00000605152 292 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 AL357078.3-201ENST00000607528 618 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.01□□□□□ -1.93
PTPN9P43378 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
PTPN9P43378 AC090617.7-201ENST00000623952 126 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
PTPN9P43378 AC091564.4-201ENST00000533934 2194 ntBASIC3.01□□□□□ -1.93
PTPN9P43378 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
PTPN9P43378 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
PTPN9P43378 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
PTPN9P43378 SNORA32.2-201ENST00000384049 122 ntBASIC3□□□□□ -1.93
PTPN9P43378 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3□□□□□ -1.93
PTPN9P43378 AL139132.1-201ENST00000431587 344 ntBASIC3□□□□□ -1.93
PTPN9P43378 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3□□□□□ -1.93
PTPN9P43378 AL359672.1-201ENST00000442302 409 ntBASIC3□□□□□ -1.93
PTPN9P43378 AC006026.2-201ENST00000457376 180 ntBASIC3□□□□□ -1.93
PTPN9P43378 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3□□□□□ -1.93
PTPN9P43378 AC104472.2-201ENST00000469035 601 ntBASIC3□□□□□ -1.93
PTPN9P43378 RPS29P26-201ENST00000477483 171 ntBASIC3□□□□□ -1.93
PTPN9P43378 RN7SL499P-201ENST00000481141 276 ntBASIC3□□□□□ -1.93
PTPN9P43378 RPS29P20-201ENST00000489592 171 ntBASIC3□□□□□ -1.93
PTPN9P43378 SCGB1D5P-201ENST00000515134 247 ntBASIC3□□□□□ -1.93
PTPN9P43378 RNU4-49P-201ENST00000516080 140 ntBASIC3□□□□□ -1.93
PTPN9P43378 SNORA74D-201ENST00000516404 141 ntBASIC3□□□□□ -1.93
PTPN9P43378 SNORD19.2-201ENST00000516978 73 ntBASIC3□□□□□ -1.93
PTPN9P43378 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3□□□□□ -1.93
PTPN9P43378 AC243972.3-201ENST00000539655 198 ntBASIC3□□□□□ -1.93
PTPN9P43378 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3□□□□□ -1.93
PTPN9P43378 AC021739.1-201ENST00000559631 174 ntBASIC3□□□□□ -1.93
PTPN9P43378 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3□□□□□ -1.93
PTPN9P43378 MIR4742-201ENST00000581069 85 ntBASIC3□□□□□ -1.93
PTPN9P43378 AC023043.2-201ENST00000589678 1026 ntBASIC3□□□□□ -1.93
PTPN9P43378 AL451007.1-201ENST00000595491 289 ntBASIC3□□□□□ -1.93
PTPN9P43378 AC005261.5-201ENST00000596280 355 ntBASIC3□□□□□ -1.93
PTPN9P43378 HNRNPDLP4-201ENST00000605144 301 ntBASIC3□□□□□ -1.93
PTPN9P43378 LARP7P1-201ENST00000605576 316 ntBASIC3□□□□□ -1.93
PTPN9P43378 AC093732.2-201ENST00000607950 274 ntBASIC3□□□□□ -1.93
PTPN9P43378 AL121757.2-201ENST00000611223 313 ntBASIC3□□□□□ -1.93
PTPN9P43378 FAM157A-202ENST00000615155 405 ntBASIC3□□□□□ -1.93
PTPN9P43378 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3□□□□□ -1.93
PTPN9P43378 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PTPN9P43378 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3□□□□□ -1.93
PTPN9P43378 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
PTPN9P43378 Y_RNA.135-201ENST00000363439 95 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 SNORA51.4-201ENST00000364993 124 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 MIR512-1-201ENST00000384913 84 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 MIR450B-201ENST00000401182 78 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.99□□□□□ -1.93
PTPN9P43378 BMS1P22-201ENST00000414726 313 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 AC022018.1-201ENST00000430685 241 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.99□□□□□ -1.93
PTPN9P43378 MTND4LP16-201ENST00000440828 295 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 USP9YP8-201ENST00000441913 500 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.99□□□□□ -1.93
PTPN9P43378 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.99□□□□□ -1.93
PTPN9P43378 NIPA2P5-201ENST00000452282 464 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.99□□□□□ -1.93
PTPN9P43378 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.99□□□□□ -1.93
PTPN9P43378 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.99□□□□□ -1.93
PTPN9P43378 SCARNA13-201ENST00000516672 275 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 RNU6-256P-201ENST00000516747 97 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 AC109479.2-201ENST00000517842 174 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PTPN9P43378 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.99□□□□□ -1.93
PTPN9P43378 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.99□□□□□ -1.93
PTPN9P43378 AP004607.1-201ENST00000524456 203 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 NUTF2P8-201ENST00000604593 363 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 uc_338.5-201ENST00000611839 155 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.99□□□□□ -1.93
PTPN9P43378 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.99□□□□□ -1.93
PTPN9P43378 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.99□□□□□ -1.93
PTPN9P43378 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.98□□□□□ -1.93
PTPN9P43378 RNA5SP139-201ENST00000364340 117 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms