Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXD9P28356 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD9P28356 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD9P28356 AL049641.1-201ENST00000441055 1948 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 AC118273.1-201ENST00000525324 3006 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 RNU6-1329P-201ENST00000365664 107 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 RNU6-1032P-201ENST00000384100 107 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 RNU6-890P-201ENST00000384121 107 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 Y_RNA.463-201ENST00000384271 102 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 SNORD15B-201ENST00000384714 146 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 RNU6-1197P-201ENST00000391183 107 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 RNU2-3P-201ENST00000410144 191 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 CYCSP33-201ENST00000414485 327 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 AC113618.1-201ENST00000416747 285 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 NDUFB4P6-201ENST00000436819 366 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD9P28356 MIR2053-201ENST00000459295 91 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 AL135752.1-201ENST00000479477 471 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD9P28356 PTP4A1P4-201ENST00000512479 322 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 SCARNA15.2-201ENST00000516409 127 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 RNU6-1046P-201ENST00000516538 107 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 RNU6-1137P-201ENST00000517073 99 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.19□□□□□ -1.9
HOXD9P28356 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD9P28356 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD9P28356 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD9P28356 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD9P28356 MIR1273C-201ENST00000578669 77 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD9P28356 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 AC006111.3-201ENST00000622137 383 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 AC091925.1-201ENST00000623204 462 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 Z99571.1-201ENST00000636677 394 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD9P28356 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.19□□□□□ -1.9
HOXD9P28356 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.19□□□□□ -1.9
HOXD9P28356 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD9P28356 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
HOXD9P28356 OR4G2P-202ENST00000641004 1759 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD9P28356 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
HOXD9P28356 AC138393.1-203ENST00000327086 343 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 RNU6-1167P-201ENST00000363227 94 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 Y_RNA.158-201ENST00000363651 101 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD9P28356 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HOXD9P28356 RNU6-463P-201ENST00000384340 107 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 SNORA1.3-201ENST00000384676 136 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 RNU6-1105P-201ENST00000384774 107 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 MIR301A-201ENST00000385261 86 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 SNORD67-201ENST00000390833 111 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 UBA52P6-201ENST00000399822 382 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 RN7SKP220-201ENST00000410611 288 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 RNU6-293P-201ENST00000411259 106 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD9P28356 MCFD2P1-201ENST00000417812 300 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD9P28356 NDUFB4P7-201ENST00000423198 363 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXD9P28356 AL592045.1-201ENST00000429867 352 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AC236972.1-201ENST00000433225 199 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AC092573.2-201ENST00000434546 243 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 RPS12P18-201ENST00000442381 270 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXD9P28356 HMGN2P13-201ENST00000476476 274 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 RPS4XP22-201ENST00000480755 780 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 RPL30P14-201ENST00000482744 348 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AC021146.2-201ENST00000504736 556 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD9P28356 RNA5SP471-201ENST00000516971 106 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 RNU6-1315P-201ENST00000517187 99 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AP002404.1-201ENST00000532005 451 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD9P28356 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD9P28356 AC011494.1-201ENST00000596454 237 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXD9P28356 AC098826.3-201ENST00000603823 466 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 AL161798.1-201ENST00000604630 131 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD9P28356 AC083806.3-201ENST00000614016 455 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 RMST_4.1-201ENST00000616886 107 ntBASIC3.18□□□□□ -1.9
HOXD9P28356 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD9P28356 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD9P28356 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD9P28356 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD9P28356 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 RNU6-490P-201ENST00000362985 107 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 SNORD56.3-201ENST00000363507 71 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 RNU1-140P-201ENST00000365040 165 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD9P28356 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXD9P28356 AL590383.1-201ENST00000428602 75 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 AL590664.1-201ENST00000448065 339 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD9P28356 RPS20P22-201ENST00000473700 357 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 RN7SL442P-201ENST00000473804 320 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 RPL7P42-201ENST00000481005 679 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 AC022493.1-201ENST00000492984 337 ntBASIC3.17□□□□□ -1.9
HOXD9P28356 RNU6-470P-201ENST00000515954 104 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms