Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-1303P-201ENST00000364841 107 ntBASIC2.71□□□□□ -1.98
MSH3P20585 RNA5SP219-201ENST00000390940 113 ntBASIC2.71□□□□□ -1.98
MSH3P20585 U3.26-201ENST00000391236 204 ntBASIC2.71□□□□□ -1.98
MSH3P20585 SNORA40C-201ENST00000391285 128 ntBASIC2.71□□□□□ -1.98
MSH3P20585 MIR888-201ENST00000401186 77 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AC022028.1-201ENST00000412054 408 ntBASIC2.71□□□□□ -1.98
MSH3P20585 CYCSP33-201ENST00000414485 327 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AC009161.1-201ENST00000417306 376 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AC098614.3-201ENST00000438957 440 ntBASIC2.71□□□□□ -1.98
MSH3P20585 Z96811.1-201ENST00000445880 108 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.71□□□□□ -1.98
MSH3P20585 MTND5P20-201ENST00000448677 143 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH3P20585 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH3P20585 AC096576.1-201ENST00000489014 359 ntBASIC2.71□□□□□ -1.98
MSH3P20585 HMGN1P12-201ENST00000499125 195 ntBASIC2.71□□□□□ -1.98
MSH3P20585 RNU1-86P-201ENST00000516108 154 ntBASIC2.71□□□□□ -1.98
MSH3P20585 RNU1-107P-201ENST00000516617 154 ntBASIC2.71□□□□□ -1.98
MSH3P20585 SNORA31.19-201ENST00000517079 126 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.71□□□□□ -1.98
MSH3P20585 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.71□□□□□ -1.98
MSH3P20585 ELOCP31-201ENST00000540463 467 ntBASIC2.71□□□□□ -1.98
MSH3P20585 LRRC37A5P-203ENST00000580181 585 ntBASIC2.71□□□□□ -1.98
MSH3P20585 MIR3941-201ENST00000582572 103 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH3P20585 VN1R80P-201ENST00000597126 338 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AC005046.1-201ENST00000608515 625 ntBASIC2.71□□□□□ -1.98
MSH3P20585 Z82243.1-201ENST00000609432 473 ntBASIC2.71□□□□□ -1.98
MSH3P20585 RMST_4.1-201ENST00000616886 107 ntBASIC2.71□□□□□ -1.98
MSH3P20585 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AC073308.1-201ENST00000623696 305 ntBASIC2.71□□□□□ -1.98
MSH3P20585 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.71□□□□□ -1.98
MSH3P20585 AC099654.7-201ENST00000635788 2127 ntBASIC2.71□□□□□ -1.98
MSH3P20585 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.71□□□□□ -1.98
MSH3P20585 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.71□□□□□ -1.98
MSH3P20585 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
MSH3P20585 MIR412-201ENST00000362142 91 ntBASIC2.7□□□□□ -1.98
MSH3P20585 SNORD3E-201ENST00000362899 217 ntBASIC2.7□□□□□ -1.98
MSH3P20585 RNU6-778P-201ENST00000363269 103 ntBASIC2.7□□□□□ -1.98
MSH3P20585 SNORA80A-201ENST00000363922 136 ntBASIC2.7□□□□□ -1.98
MSH3P20585 RNA5SP139-201ENST00000364340 117 ntBASIC2.7□□□□□ -1.98
MSH3P20585 RNU6-867P-201ENST00000364956 107 ntBASIC2.7□□□□□ -1.98
MSH3P20585 RNU1-109P-201ENST00000383960 147 ntBASIC2.7□□□□□ -1.98
MSH3P20585 RNU6-767P-201ENST00000384132 107 ntBASIC2.7□□□□□ -1.98
MSH3P20585 RNU2-3P-201ENST00000410144 191 ntBASIC2.7□□□□□ -1.98
MSH3P20585 RNA5SP21-201ENST00000410917 96 ntBASIC2.7□□□□□ -1.98
MSH3P20585 RPLP0P7-201ENST00000416050 667 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.7□□□□□ -1.98
MSH3P20585 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.7□□□□□ -1.98
MSH3P20585 SKA2P1-201ENST00000425592 390 ntBASIC2.7□□□□□ -1.98
MSH3P20585 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.7□□□□□ -1.98
MSH3P20585 AL714022.1-201ENST00000439897 151 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH3P20585 UBBP3-201ENST00000445497 241 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.7□□□□□ -1.98
MSH3P20585 NDUFB1P2-201ENST00000449477 176 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.7□□□□□ -1.98
MSH3P20585 RAC1P5-201ENST00000512182 576 ntBASIC2.7□□□□□ -1.98
MSH3P20585 SNORA31.21-201ENST00000517180 77 ntBASIC2.7□□□□□ -1.98
MSH3P20585 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.7□□□□□ -1.98
MSH3P20585 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.7□□□□□ -1.98
MSH3P20585 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.7□□□□□ -1.98
MSH3P20585 AC090136.1-201ENST00000520009 240 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AC107953.1-201ENST00000522216 297 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
MSH3P20585 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.7□□□□□ -1.98
MSH3P20585 GTF3AP2-201ENST00000557014 266 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.7□□□□□ -1.98
MSH3P20585 CTHRC1P1-201ENST00000605383 469 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AL161629.2-201ENST00000615347 275 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AC009248.2-201ENST00000619826 254 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AL031601.2-202ENST00000622650 282 ntBASIC2.7□□□□□ -1.98
MSH3P20585 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH3P20585 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
MSH3P20585 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.69□□□□□ -1.98
MSH3P20585 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
MSH3P20585 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
MSH3P20585 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH3P20585 CBX3P1-201ENST00000325243 554 ntBASIC2.69□□□□□ -1.98
MSH3P20585 RNU6-845P-201ENST00000362578 103 ntBASIC2.69□□□□□ -1.98
MSH3P20585 RNU1-112P-201ENST00000364401 164 ntBASIC2.69□□□□□ -1.98
MSH3P20585 RNU6-384P-201ENST00000364900 104 ntBASIC2.69□□□□□ -1.98
MSH3P20585 RNU6-166P-201ENST00000384371 107 ntBASIC2.69□□□□□ -1.98
MSH3P20585 RNU6-831P-201ENST00000384548 107 ntBASIC2.69□□□□□ -1.98
MSH3P20585 Y_RNA.530-201ENST00000384587 101 ntBASIC2.69□□□□□ -1.98
MSH3P20585 MIR592-201ENST00000384959 97 ntBASIC2.69□□□□□ -1.98
MSH3P20585 EIF4E2P1-201ENST00000393781 255 ntBASIC2.69□□□□□ -1.98
MSH3P20585 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSH3P20585 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH3P20585 USP9YP20-201ENST00000419224 558 ntBASIC2.69□□□□□ -1.98
MSH3P20585 MTCO3P46-201ENST00000425787 232 ntBASIC2.69□□□□□ -1.98
MSH3P20585 AC098614.2-201ENST00000426040 255 ntBASIC2.69□□□□□ -1.98
MSH3P20585 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
MSH3P20585 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH3P20585 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH3P20585 AL583843.1-201ENST00000456070 346 ntBASIC2.69□□□□□ -1.98
MSH3P20585 RNU7-66P-201ENST00000459469 62 ntBASIC2.69□□□□□ -1.98
MSH3P20585 AC103975.1-201ENST00000482506 483 ntBASIC2.69□□□□□ -1.98
MSH3P20585 AC011005.2-201ENST00000487324 359 ntBASIC2.69□□□□□ -1.98
MSH3P20585 HMGB1P30-201ENST00000492455 606 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms