Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 AL354941.1-201ENST00000438600 464 ntBASIC1.34□□□□□ -2.19
SGCEO43556 HMGB1P18-201ENST00000438801 619 ntBASIC1.34□□□□□ -2.19
SGCEO43556 EEF1A1P39-201ENST00000440791 250 ntBASIC1.34□□□□□ -2.19
SGCEO43556 AC118469.1-201ENST00000442943 488 ntBASIC1.34□□□□□ -2.19
SGCEO43556 AL583843.1-201ENST00000456070 346 ntBASIC1.34□□□□□ -2.19
SGCEO43556 AMD1P1-201ENST00000457220 922 ntBASIC1.34□□□□□ -2.19
SGCEO43556 snoU13.14-201ENST00000459372 104 ntBASIC1.34□□□□□ -2.19
SGCEO43556 Y_RNA.675-201ENST00000516389 149 ntBASIC1.34□□□□□ -2.19
SGCEO43556 AC091163.3-201ENST00000518269 1144 ntBASIC1.34□□□□□ -2.19
SGCEO43556 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.34□□□□□ -2.19
SGCEO43556 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC1.34□□□□□ -2.19
SGCEO43556 AP004247.1-201ENST00000531556 1289 ntBASIC1.34□□□□□ -2.19
SGCEO43556 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.34□□□□□ -2.19
SGCEO43556 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.34□□□□□ -2.19
SGCEO43556 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC1.34□□□□□ -2.19
SGCEO43556 BCRP9-201ENST00000605312 388 ntBASIC1.34□□□□□ -2.19
SGCEO43556 AC130324.3-201ENST00000614165 542 ntBASIC1.34□□□□□ -2.19
SGCEO43556 AL356596.1-201ENST00000624230 379 ntBASIC1.34□□□□□ -2.19
SGCEO43556 AC092104.1-201ENST00000497346 1441 ntBASIC1.33□□□□□ -2.2
SGCEO43556 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
SGCEO43556 MIR412-201ENST00000362142 91 ntBASIC1.33□□□□□ -2.2
SGCEO43556 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.33□□□□□ -2.2
SGCEO43556 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.33□□□□□ -2.2
SGCEO43556 MIR1304-201ENST00000408243 91 ntBASIC1.33□□□□□ -2.2
SGCEO43556 Y_RNA.623-201ENST00000411128 95 ntBASIC1.33□□□□□ -2.2
SGCEO43556 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC1.33□□□□□ -2.2
SGCEO43556 AL513185.2-201ENST00000425543 193 ntBASIC1.33□□□□□ -2.2
SGCEO43556 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.33□□□□□ -2.2
SGCEO43556 SNORD13-201ENST00000459299 104 ntBASIC1.33□□□□□ -2.2
SGCEO43556 AC114801.2-201ENST00000503825 781 ntBASIC1.33□□□□□ -2.2
SGCEO43556 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.33□□□□□ -2.2
SGCEO43556 RNU6-1092P-201ENST00000516955 87 ntBASIC1.33□□□□□ -2.2
SGCEO43556 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.33□□□□□ -2.2
SGCEO43556 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC1.33□□□□□ -2.2
SGCEO43556 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.33□□□□□ -2.2
SGCEO43556 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.33□□□□□ -2.2
SGCEO43556 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.33□□□□□ -2.2
SGCEO43556 MIR3146-201ENST00000580367 79 ntBASIC1.33□□□□□ -2.2
SGCEO43556 AC091965.4-201ENST00000607691 587 ntBASIC1.33□□□□□ -2.2
SGCEO43556 MIR7974-201ENST00000615835 79 ntBASIC1.33□□□□□ -2.2
SGCEO43556 AL138955.1-201ENST00000622881 1040 ntBASIC1.33□□□□□ -2.2
SGCEO43556 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.33□□□□□ -2.2
SGCEO43556 AC241585.2-209ENST00000638217 143 ntBASIC1.33□□□□□ -2.2
SGCEO43556 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
SGCEO43556 AL161722.3-201ENST00000605789 2983 ntBASIC1.32□□□□□ -2.2
SGCEO43556 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
SGCEO43556 RNU1-62P-201ENST00000362599 164 ntBASIC1.32□□□□□ -2.2
SGCEO43556 RNY3P13-201ENST00000365542 102 ntBASIC1.32□□□□□ -2.2
SGCEO43556 RNU6-190P-201ENST00000384154 102 ntBASIC1.32□□□□□ -2.2
SGCEO43556 SNORA67.6-201ENST00000391093 99 ntBASIC1.32□□□□□ -2.2
SGCEO43556 RNU2-36P-201ENST00000410361 191 ntBASIC1.32□□□□□ -2.2
SGCEO43556 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.32□□□□□ -2.2
SGCEO43556 AL627311.1-201ENST00000431514 115 ntBASIC1.32□□□□□ -2.2
SGCEO43556 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.32□□□□□ -2.2
SGCEO43556 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.32□□□□□ -2.2
SGCEO43556 FDX1P2-201ENST00000450769 375 ntBASIC1.32□□□□□ -2.2
SGCEO43556 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.32□□□□□ -2.2
SGCEO43556 AC006026.2-201ENST00000457376 180 ntBASIC1.32□□□□□ -2.2
SGCEO43556 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.32□□□□□ -2.2
SGCEO43556 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.32□□□□□ -2.2
SGCEO43556 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.32□□□□□ -2.2
SGCEO43556 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.32□□□□□ -2.2
SGCEO43556 AC008269.2-201ENST00000561915 1105 ntBASIC1.32□□□□□ -2.2
SGCEO43556 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC1.32□□□□□ -2.2
SGCEO43556 AL592221.1-201ENST00000605266 382 ntBASIC1.32□□□□□ -2.2
SGCEO43556 AC123912.5-201ENST00000605470 343 ntBASIC1.32□□□□□ -2.2
SGCEO43556 MIR15A-201ENST00000607334 83 ntBASIC1.32□□□□□ -2.2
SGCEO43556 MIR8074-201ENST00000615081 81 ntBASIC1.32□□□□□ -2.2
SGCEO43556 AC007792.1-201ENST00000623023 402 ntBASIC1.32□□□□□ -2.2
SGCEO43556 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.32□□□□□ -2.2
SGCEO43556 AC013437.2-201ENST00000639587 677 ntBASIC1.32□□□□□ -2.2
SGCEO43556 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
SGCEO43556 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
SGCEO43556 Y_RNA.67-201ENST00000362870 100 ntBASIC1.31□□□□□ -2.2
SGCEO43556 RNU6-944P-201ENST00000364023 107 ntBASIC1.31□□□□□ -2.2
SGCEO43556 RNU6-960P-201ENST00000364056 120 ntBASIC1.31□□□□□ -2.2
SGCEO43556 SNORA4.1-201ENST00000364263 144 ntBASIC1.31□□□□□ -2.2
SGCEO43556 RNU5E-6P-201ENST00000365574 115 ntBASIC1.31□□□□□ -2.2
SGCEO43556 SNORD116.1-201ENST00000365628 92 ntBASIC1.31□□□□□ -2.2
SGCEO43556 RNU6-72P-201ENST00000384285 79 ntBASIC1.31□□□□□ -2.2
SGCEO43556 MIR150-201ENST00000385048 84 ntBASIC1.31□□□□□ -2.2
SGCEO43556 MIR1323-201ENST00000408090 73 ntBASIC1.31□□□□□ -2.2
SGCEO43556 RNA5SP100-201ENST00000410903 110 ntBASIC1.31□□□□□ -2.2
SGCEO43556 RNA5SP59-201ENST00000410922 110 ntBASIC1.31□□□□□ -2.2
SGCEO43556 RPS3AP37-201ENST00000419176 745 ntBASIC1.31□□□□□ -2.2
SGCEO43556 NCOR1P3-201ENST00000420479 303 ntBASIC1.31□□□□□ -2.2
SGCEO43556 AC006366.1-201ENST00000422002 759 ntBASIC1.31□□□□□ -2.2
SGCEO43556 SDAD1P3-201ENST00000427380 333 ntBASIC1.31□□□□□ -2.2
SGCEO43556 AL365400.1-201ENST00000431854 640 ntBASIC1.31□□□□□ -2.2
SGCEO43556 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.31□□□□□ -2.2
SGCEO43556 NDUFB1P2-201ENST00000449477 176 ntBASIC1.31□□□□□ -2.2
SGCEO43556 ZNF736P5Y-201ENST00000451173 805 ntBASIC1.31□□□□□ -2.2
SGCEO43556 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
SGCEO43556 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC1.31□□□□□ -2.2
SGCEO43556 MTCYBP40-201ENST00000509390 1135 ntBASIC1.31□□□□□ -2.2
SGCEO43556 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
SGCEO43556 RNU6-965P-201ENST00000516721 96 ntBASIC1.31□□□□□ -2.2
SGCEO43556 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.31□□□□□ -2.2
SGCEO43556 AC013828.2-201ENST00000532487 235 ntBASIC1.31□□□□□ -2.2
SGCEO43556 MTCYBP33-201ENST00000575007 1130 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms