Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RNU6-586P-201ENST00000517265 104 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 RNU2-19P-201ENST00000517288 84 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.12□□□□□ -2.07
CLDN3O15551 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.12□□□□□ -2.07
CLDN3O15551 AC107953.1-201ENST00000522216 297 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 AC022616.3-201ENST00000523940 148 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.12□□□□□ -2.07
CLDN3O15551 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CLDN3O15551 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.12□□□□□ -2.07
CLDN3O15551 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.12□□□□□ -2.07
CLDN3O15551 ZNF321P-202ENST00000550843 495 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.12□□□□□ -2.07
CLDN3O15551 AL158827.2-201ENST00000602494 330 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 SNRPGP19-201ENST00000603826 189 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 AL691447.3-201ENST00000635020 330 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 MTND4P1-201ENST00000457501 1466 ntBASIC2.12□□□□□ -2.07
CLDN3O15551 KPNA2P1-201ENST00000458289 1591 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CLDN3O15551 MIR17-201ENST00000385012 84 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 C1DP2-201ENST00000418167 426 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 PGBD4P6-201ENST00000421501 610 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 HMGN2P38-201ENST00000423806 265 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 MTND5P25-201ENST00000430499 799 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.11□□□□□ -2.07
CLDN3O15551 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.11□□□□□ -2.07
CLDN3O15551 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.11□□□□□ -2.07
CLDN3O15551 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.11□□□□□ -2.07
CLDN3O15551 RPL30P6-201ENST00000475925 342 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.11□□□□□ -2.07
CLDN3O15551 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.11□□□□□ -2.07
CLDN3O15551 Y_RNA.687-201ENST00000516558 91 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.11□□□□□ -2.07
CLDN3O15551 EEF1A1P37-201ENST00000522748 715 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.11□□□□□ -2.07
CLDN3O15551 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.11□□□□□ -2.07
CLDN3O15551 MIR4287-201ENST00000579398 78 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 MIR548AB-201ENST00000584917 84 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 AC005771.1-201ENST00000585581 349 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 AL670379.2-201ENST00000604983 252 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 AL133173.2-201ENST00000614270 90 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 AP001486.3-201ENST00000615334 372 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 SCARNA4-202ENST00000625402 129 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 AC019226.2-201ENST00000625973 424 ntBASIC2.11□□□□□ -2.07
CLDN3O15551 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.11□□□□□ -2.07
CLDN3O15551 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.1□□□□□ -2.07
CLDN3O15551 HAUS6P2-201ENST00000433254 2404 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CLDN3O15551 RNU6-179P-201ENST00000363350 107 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 AL356379.1-201ENST00000414105 126 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.1□□□□□ -2.07
CLDN3O15551 Z99497.1-201ENST00000421282 135 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC2.1□□□□□ -2.07
CLDN3O15551 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.1□□□□□ -2.07
CLDN3O15551 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.1□□□□□ -2.07
CLDN3O15551 TAF9P1-201ENST00000445421 515 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 TAF9P2-201ENST00000454958 515 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.1□□□□□ -2.07
CLDN3O15551 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.1□□□□□ -2.07
CLDN3O15551 AC006026.2-201ENST00000457376 180 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.1□□□□□ -2.07
CLDN3O15551 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.1□□□□□ -2.07
CLDN3O15551 RNA5SP182-201ENST00000516064 82 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 RNA5SP137-201ENST00000516833 135 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 RNU6-1220P-201ENST00000517126 108 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.1□□□□□ -2.07
CLDN3O15551 CR383656.8-201ENST00000549046 145 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 AC008015.1-201ENST00000555505 465 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.1□□□□□ -2.07
CLDN3O15551 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.1□□□□□ -2.07
CLDN3O15551 AC009977.1-201ENST00000586015 570 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 AC093424.1-201ENST00000604999 338 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 AL451064.1-201ENST00000607718 471 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.1□□□□□ -2.07
CLDN3O15551 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.1□□□□□ -2.07
CLDN3O15551 SDR42E1P4-201ENST00000620894 481 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 AF246928.1-201ENST00000623768 87 ntBASIC2.1□□□□□ -2.07
CLDN3O15551 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.1□□□□□ -2.07
CLDN3O15551 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
CLDN3O15551 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
CLDN3O15551 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
CLDN3O15551 OR4G2P-201ENST00000328113 903 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CLDN3O15551 Y_RNA.22-201ENST00000362492 102 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 RNU6-61P-201ENST00000365528 109 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 MIR1289-2-201ENST00000408360 111 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
CLDN3O15551 EIF1AXP1-201ENST00000419267 435 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.09□□□□□ -2.07
CLDN3O15551 MTND4P20-201ENST00000424125 869 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.09□□□□□ -2.07
CLDN3O15551 AC104850.1-201ENST00000435940 476 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.09□□□□□ -2.07
CLDN3O15551 BZW1P2-201ENST00000473537 826 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.09□□□□□ -2.07
CLDN3O15551 AC091965.2-201ENST00000512324 613 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 FABP5P5-201ENST00000515537 406 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 RN7SKP287-201ENST00000516546 266 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 RNU6-232P-201ENST00000517144 64 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 AC109329.1-201ENST00000518744 317 ntBASIC2.09□□□□□ -2.07
CLDN3O15551 AC034114.1-201ENST00000520293 285 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms