Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CBX4O00257 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.73□□□□□ -1.81
CBX4O00257 Y_RNA.48-201ENST00000362710 103 ntBASIC3.73□□□□□ -1.81
CBX4O00257 Y_RNA.148-201ENST00000363557 117 ntBASIC3.73□□□□□ -1.81
CBX4O00257 RNA5SP72-201ENST00000364442 117 ntBASIC3.73□□□□□ -1.81
CBX4O00257 SNORA63C-201ENST00000364578 129 ntBASIC3.73□□□□□ -1.81
CBX4O00257 Y_RNA.364-201ENST00000365532 101 ntBASIC3.73□□□□□ -1.81
CBX4O00257 SNORD116-20-201ENST00000384529 92 ntBASIC3.73□□□□□ -1.81
CBX4O00257 MIR218-2-201ENST00000385006 110 ntBASIC3.73□□□□□ -1.81
CBX4O00257 BTF3L4P2-201ENST00000392798 346 ntBASIC3.73□□□□□ -1.81
CBX4O00257 ATP5A1P2-201ENST00000412323 255 ntBASIC3.73□□□□□ -1.81
CBX4O00257 AC008267.5-201ENST00000424928 265 ntBASIC3.73□□□□□ -1.81
CBX4O00257 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.73□□□□□ -1.81
CBX4O00257 NDUFB1P1-201ENST00000435191 180 ntBASIC3.73□□□□□ -1.81
CBX4O00257 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.73□□□□□ -1.81
CBX4O00257 RPL21P23-201ENST00000446654 460 ntBASIC3.73□□□□□ -1.81
CBX4O00257 AC012308.1-201ENST00000451232 178 ntBASIC3.73□□□□□ -1.81
CBX4O00257 AC010099.1-201ENST00000455434 375 ntBASIC3.73□□□□□ -1.81
CBX4O00257 CEACAMP4-201ENST00000457676 421 ntBASIC3.73□□□□□ -1.81
CBX4O00257 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.73□□□□□ -1.81
CBX4O00257 RNU6-120P-201ENST00000516077 103 ntBASIC3.73□□□□□ -1.81
CBX4O00257 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.73□□□□□ -1.81
CBX4O00257 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.73□□□□□ -1.81
CBX4O00257 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.73□□□□□ -1.81
CBX4O00257 HMGN2P15-201ENST00000585707 270 ntBASIC3.73□□□□□ -1.81
CBX4O00257 AC110741.2-201ENST00000605278 268 ntBASIC3.73□□□□□ -1.81
CBX4O00257 HMGB1P24-202ENST00000615653 685 ntBASIC3.73□□□□□ -1.81
CBX4O00257 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.73□□□□□ -1.81
CBX4O00257 MIR7975-201ENST00000619350 68 ntBASIC3.73□□□□□ -1.81
CBX4O00257 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.73□□□□□ -1.81
CBX4O00257 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.73□□□□□ -1.81
CBX4O00257 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.73□□□□□ -1.81
CBX4O00257 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CBX4O00257 ZNF299P-201ENST00000406845 1804 ntBASIC3.72□□□□□ -1.81
CBX4O00257 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.72□□□□□ -1.81
CBX4O00257 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.72□□□□□ -1.81
CBX4O00257 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CBX4O00257 MTND5P9-201ENST00000503854 1755 ntBASIC3.72□□□□□ -1.81
CBX4O00257 MIR423-201ENST00000362201 94 ntBASIC3.72□□□□□ -1.81
CBX4O00257 RNY1P16-201ENST00000363063 111 ntBASIC3.72□□□□□ -1.81
CBX4O00257 Y_RNA.145-201ENST00000363527 102 ntBASIC3.72□□□□□ -1.81
CBX4O00257 RNU6-1032P-201ENST00000384100 107 ntBASIC3.72□□□□□ -1.81
CBX4O00257 RNU6-198P-201ENST00000384258 104 ntBASIC3.72□□□□□ -1.81
CBX4O00257 MIR490-201ENST00000384865 128 ntBASIC3.72□□□□□ -1.81
CBX4O00257 MIR1183-201ENST00000408856 89 ntBASIC3.72□□□□□ -1.81
CBX4O00257 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.72□□□□□ -1.81
CBX4O00257 AC005300.1-201ENST00000428401 373 ntBASIC3.72□□□□□ -1.81
CBX4O00257 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.72□□□□□ -1.81
CBX4O00257 AP002884.2-201ENST00000471647 395 ntBASIC3.72□□□□□ -1.81
CBX4O00257 HMGN1P10-201ENST00000474557 553 ntBASIC3.72□□□□□ -1.81
CBX4O00257 MRPL42P6-201ENST00000486397 371 ntBASIC3.72□□□□□ -1.81
CBX4O00257 BTF3L4P4-201ENST00000506381 449 ntBASIC3.72□□□□□ -1.81
CBX4O00257 AC116655.1-201ENST00000508324 901 ntBASIC3.72□□□□□ -1.81
CBX4O00257 NDUFB4P9-201ENST00000511646 388 ntBASIC3.72□□□□□ -1.81
CBX4O00257 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.72□□□□□ -1.81
CBX4O00257 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.72□□□□□ -1.81
CBX4O00257 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.72□□□□□ -1.81
CBX4O00257 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.72□□□□□ -1.81
CBX4O00257 AC116312.1-201ENST00000606841 314 ntBASIC3.72□□□□□ -1.81
CBX4O00257 AL136164.4-201ENST00000625013 2135 ntBASIC3.72□□□□□ -1.81
CBX4O00257 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.72□□□□□ -1.81
CBX4O00257 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.72□□□□□ -1.81
CBX4O00257 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CBX4O00257 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.81
CBX4O00257 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CBX4O00257 SNORD9-201ENST00000362566 104 ntBASIC3.71□□□□□ -1.82
CBX4O00257 RNU1-115P-201ENST00000365329 160 ntBASIC3.71□□□□□ -1.82
CBX4O00257 RNY1P14-201ENST00000384426 108 ntBASIC3.71□□□□□ -1.82
CBX4O00257 Y_RNA.577-201ENST00000384794 101 ntBASIC3.71□□□□□ -1.82
CBX4O00257 FTH1P15-201ENST00000406984 280 ntBASIC3.71□□□□□ -1.82
CBX4O00257 Z98941.1-201ENST00000407764 100 ntBASIC3.71□□□□□ -1.82
CBX4O00257 SNORA11.2-201ENST00000408318 127 ntBASIC3.71□□□□□ -1.82
CBX4O00257 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.71□□□□□ -1.82
CBX4O00257 NUP35P1-201ENST00000422734 947 ntBASIC3.71□□□□□ -1.82
CBX4O00257 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.71□□□□□ -1.82
CBX4O00257 CYCSP32-201ENST00000440548 321 ntBASIC3.71□□□□□ -1.82
CBX4O00257 CYCSP35-201ENST00000451978 304 ntBASIC3.71□□□□□ -1.82
CBX4O00257 BX510359.1-201ENST00000456973 237 ntBASIC3.71□□□□□ -1.82
CBX4O00257 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.71□□□□□ -1.82
CBX4O00257 RNU6-581P-201ENST00000516214 105 ntBASIC3.71□□□□□ -1.82
CBX4O00257 AP000889.1-201ENST00000530968 660 ntBASIC3.71□□□□□ -1.82
CBX4O00257 CR383656.8-201ENST00000549046 145 ntBASIC3.71□□□□□ -1.82
CBX4O00257 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.71□□□□□ -1.82
CBX4O00257 AC005014.2-201ENST00000607795 599 ntBASIC3.71□□□□□ -1.82
CBX4O00257 MIR486-1-201ENST00000612171 68 ntBASIC3.71□□□□□ -1.82
CBX4O00257 AC007485.1-201ENST00000616755 206 ntBASIC3.71□□□□□ -1.82
CBX4O00257 AC024581.2-201ENST00000619986 252 ntBASIC3.71□□□□□ -1.82
CBX4O00257 AC097372.5-201ENST00000623665 376 ntBASIC3.71□□□□□ -1.82
CBX4O00257 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CBX4O00257 MTND5P1-201ENST00000445440 1375 ntBASIC3.71□□□□□ -1.82
CBX4O00257 MTND4P1-201ENST00000457501 1466 ntBASIC3.71□□□□□ -1.82
CBX4O00257 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CBX4O00257 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.71□□□□□ -1.82
CBX4O00257 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CBX4O00257 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CBX4O00257 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.7□□□□□ -1.82
CBX4O00257 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CBX4O00257 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
CBX4O00257 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.7□□□□□ -1.82
CBX4O00257 AC007256.1-201ENST00000392253 2765 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms