Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 U2.14-201ENST00000615943 113 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AL354798.1-201ENST00000622505 329 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AC008785.1-201ENST00000624475 456 ntBASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.97□□□□□ -1.61
CHMP3Q9Y3E7 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
CHMP3Q9Y3E7 AC011266.1-201ENST00000624119 3569 ntBASIC4.96□□□□□ -1.61
CHMP3Q9Y3E7 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
CHMP3Q9Y3E7 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.61
CHMP3Q9Y3E7 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
CHMP3Q9Y3E7 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.96□□□□□ -1.61
CHMP3Q9Y3E7 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 RNA5SP399-201ENST00000364003 117 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 SNORA62.3-201ENST00000365110 153 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 RNA5SP239-201ENST00000410218 129 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 RPL27AP8-201ENST00000424277 446 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 RPL21P40-201ENST00000428586 483 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 AL445584.1-201ENST00000431451 330 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 PIGFP3-201ENST00000441918 722 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 KC877373.1-201ENST00000479066 408 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 RNU6-496P-201ENST00000516145 99 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 RN7SKP272-201ENST00000516988 232 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 MRPS36P4-201ENST00000534436 298 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 MIR4659A-201ENST00000580269 81 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 AC010620.2-201ENST00000600135 313 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 AL645944.1-201ENST00000603857 493 ntBASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CHMP3Q9Y3E7 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AP001486.2-201ENST00000561652 5113 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 RNU6-1301P-201ENST00000362724 104 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 Y_RNA.76-201ENST00000362931 109 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 RNU5E-7P-201ENST00000365290 117 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 MIR30B-201ENST00000384850 88 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AC006517.1-201ENST00000480485 328 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 RNA5SP154-201ENST00000516193 111 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 RNA5SP165-201ENST00000517142 115 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AC022868.1-201ENST00000517767 391 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AC024405.2-202ENST00000532731 184 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 CBX3P4-201ENST00000538909 354 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AC010928.2-201ENST00000588017 287 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 U4.7-201ENST00000638126 106 ntBASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
CHMP3Q9Y3E7 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 AC090740.1-201ENST00000623193 2262 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 HAUS6P2-201ENST00000433254 2404 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 Y_RNA.199-201ENST00000364014 102 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 RNU6-213P-201ENST00000384051 104 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 Y_RNA.464-201ENST00000384282 110 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 MIR23B-201ENST00000384832 97 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 MIR124-3-201ENST00000384866 87 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 MIR34A-201ENST00000385130 110 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 AC017079.2-201ENST00000416102 485 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 AL358453.1-201ENST00000422522 250 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 AL078601.1-201ENST00000444542 271 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 ANP32BP2-201ENST00000454525 545 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 HSPE1P25-201ENST00000455484 251 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 RN7SL585P-201ENST00000470538 280 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 RN7SL323P-201ENST00000494712 295 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 AC015813.4-201ENST00000610469 179 ntBASIC4.94□□□□□ -1.62
CHMP3Q9Y3E7 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms