Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC105417.1-201ENST00000514691 285 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AL138976.2-201ENST00000563989 694 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 MIR3611-201ENST00000584484 83 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AL670379.2-201ENST00000604983 252 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AL160281.1-201ENST00000605307 311 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AC136475.10-201ENST00000620253 385 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 RMST_7.1-201ENST00000621935 268 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AC007792.1-201ENST00000623023 402 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AL137790.1-201ENST00000634283 177 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 FO624990.1-201ENST00000636373 85 ntBASIC2.22□□□□□ -2.05
FOXA2Q9Y261 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.22□□□□□ -2.05
FOXA2Q9Y261 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.21□□□□□ -2.05
FOXA2Q9Y261 AP006437.1-201ENST00000641440 3685 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AL139276.1-201ENST00000311910 1001 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 SNORA3A-201ENST00000364113 130 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 RNU6-1303P-201ENST00000364841 107 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 RNU6-1032P-201ENST00000384100 107 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 SNORD70.1-201ENST00000391007 85 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 GSTA9P-201ENST00000406231 611 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 RNU2-23P-201ENST00000410545 195 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC002486.1-201ENST00000435098 391 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 PRPS1P1-201ENST00000445305 876 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AL356010.1-201ENST00000456364 102 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 SNRPFP3-201ENST00000457792 225 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 SCARNA18-201ENST00000459004 134 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC079140.3-201ENST00000511111 550 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AP001893.2-201ENST00000526949 202 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC093249.1-201ENST00000567049 203 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC245884.12-201ENST00000615364 59 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 Z69720.2-201ENST00000624755 279 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 AC090517.3-201ENST00000625170 141 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 Z82209.1-201ENST00000422141 2135 ntBASIC2.21□□□□□ -2.06
FOXA2Q9Y261 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.21□□□□□ -2.06
FOXA2Q9Y261 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AC002543.1-201ENST00000299783 1954 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 RNU6-655P-201ENST00000362858 107 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 RNU1-138P-201ENST00000384093 164 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 RNU6-1042P-201ENST00000384204 107 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 SNORD116-2-201ENST00000384274 95 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 Y_RNA.480-201ENST00000384364 102 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 RNU1-148P-201ENST00000384472 162 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 SNORD116-6-201ENST00000384711 96 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 MIR561-201ENST00000385216 97 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AL591416.1-201ENST00000404015 867 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 BTF3P7-201ENST00000407097 488 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 COTL1P1-201ENST00000422309 375 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AC087499.2-201ENST00000432861 149 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 IFNA11P-201ENST00000446352 526 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 RPL30P12-201ENST00000474666 353 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AC079140.5-201ENST00000507882 310 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 RNA5SP367-201ENST00000516557 118 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 RNU6-826P-201ENST00000516827 104 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 RNU6-586P-201ENST00000517265 104 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 MIR3126-201ENST00000577443 74 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 MIR4446-201ENST00000578505 67 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 NDUFA8P1-201ENST00000605525 367 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AC007684.1-201ENST00000609671 477 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.2□□□□□ -2.06
FOXA2Q9Y261 AC022418.1-201ENST00000624118 445 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.2□□□□□ -2.06
FOXA2Q9Y261 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
FOXA2Q9Y261 RNU6-37P-201ENST00000362692 107 ntBASIC2.19□□□□□ -2.06
FOXA2Q9Y261 Y_RNA.159-201ENST00000363674 87 ntBASIC2.19□□□□□ -2.06
FOXA2Q9Y261 RNU6-525P-201ENST00000363685 104 ntBASIC2.19□□□□□ -2.06
FOXA2Q9Y261 RNU6-1210P-201ENST00000363775 107 ntBASIC2.19□□□□□ -2.06
FOXA2Q9Y261 RNU6-11P-201ENST00000364234 107 ntBASIC2.19□□□□□ -2.06
FOXA2Q9Y261 RNU6-25P-201ENST00000383873 107 ntBASIC2.19□□□□□ -2.06
FOXA2Q9Y261 RNU6-1-201ENST00000383898 107 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms