Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 SKA2P1-201ENST00000425592 390 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 AC128713.1-201ENST00000471495 306 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 SLC25A15P5-201ENST00000508033 253 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-1183P-201ENST00000517054 60 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 AC109479.2-201ENST00000517842 174 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 MIR5690-201ENST00000583739 73 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 AC008962.1-201ENST00000605729 304 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 AL133255.1-201ENST00000606374 441 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 MIR92B-201ENST00000607575 96 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 SNORA50A-202ENST00000629536 136 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 Y_RNA.259-201ENST00000364619 101 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-95P-201ENST00000384697 107 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 SNORD15B-201ENST00000384714 146 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 MIR183-201ENST00000384958 110 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 SNORA48.8-201ENST00000391324 134 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 RNA5SP274-201ENST00000410484 108 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 PGBD4P6-201ENST00000421501 610 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 AC005300.1-201ENST00000428401 373 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 AC006026.2-201ENST00000457376 180 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 RN7SL863P-201ENST00000462370 296 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 AC109925.1-201ENST00000478069 331 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 RPL21P129-201ENST00000491732 478 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-928P-201ENST00000516876 104 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 RNA5SP380-201ENST00000517190 98 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 HPRT1P3-201ENST00000539521 576 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 HSPE1P7-201ENST00000604681 321 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 AC073308.1-201ENST00000623696 305 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 AC018692.3-201ENST00000623929 123 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 SCARNA4-202ENST00000625402 129 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 U6.105-201ENST00000637379 88 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 MIR622-201ENST00000638396 96 ntBASIC3.63□□□□□ -1.83
LIMCH1Q9UPQ0 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AL079305.1-201ENST00000623159 3008 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 MTND5P19-201ENST00000424872 1794 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 MTCO1P12-201ENST00000414273 1543 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 SNORD62.1-201ENST00000362541 86 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-270P-201ENST00000364131 105 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 XGY1-201ENST00000381172 446 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-601P-201ENST00000384540 107 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-658P-201ENST00000384606 106 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AL445529.1-201ENST00000398713 389 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AC099548.1-201ENST00000421443 426 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AC116337.1-201ENST00000509680 687 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AC113155.1-201ENST00000511141 769 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-1016P-201ENST00000516689 94 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 Y_RNA.701-201ENST00000516812 110 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 H3F3AP1-201ENST00000559984 334 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 CYCSP39-201ENST00000565821 309 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 BNIP3P22-201ENST00000593399 556 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AC008121.1-201ENST00000603244 268 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 ELOCP5-201ENST00000604924 333 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 AC068831.7-201ENST00000616954 363 ntBASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.62□□□□□ -1.83
LIMCH1Q9UPQ0 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 AL355596.1-201ENST00000565399 3996 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 AC093010.3-201ENST00000570269 15214 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-37P-201ENST00000362692 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-11P-201ENST00000364234 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-7-201ENST00000364784 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-8-201ENST00000365467 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-25P-201ENST00000383873 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-1-201ENST00000383898 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-48P-201ENST00000384161 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-36P-201ENST00000384172 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-4P-201ENST00000384205 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-5P-201ENST00000384238 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-3P-201ENST00000384314 107 ntBASIC3.61□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-16P-201ENST00000384385 107 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms