Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNA5SP31-201ENST00000411144 127 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 Z99755.1-201ENST00000414048 380 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AF228730.4-201ENST00000421457 183 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 MTND1P14-201ENST00000427400 950 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS4AQ9UN37 HMGB1P9-201ENST00000429856 646 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AL645568.3-201ENST00000433683 316 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AL078601.1-201ENST00000444542 271 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AC107399.1-201ENST00000451226 265 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 HMGN2P13-201ENST00000476476 274 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AC092436.3-201ENST00000511788 257 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 RNA5SP385-201ENST00000515947 110 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 RNU6-1332P-201ENST00000516666 104 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 MIR5680-201ENST00000577577 84 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 MIR4790-201ENST00000577799 79 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 MIR4506-201ENST00000584693 77 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AC044792.1-201ENST00000593294 196 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 MIR7112-201ENST00000616126 65 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AC002076.2-201ENST00000617362 122 ntBASIC3.23□□□□□ -1.89
VPS4AQ9UN37 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
VPS4AQ9UN37 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AC138393.1-203ENST00000327086 343 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 Y_RNA.67-201ENST00000362870 100 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 RNU6-1329P-201ENST00000365664 107 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 Y_RNA.460-201ENST00000384255 102 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 RPS4XP3-201ENST00000398541 413 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 RPL26P27-201ENST00000414397 437 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AL139396.1-201ENST00000421137 167 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 UBE2V1P4-201ENST00000425374 344 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 SAR1AP4-201ENST00000429225 591 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AL590664.1-201ENST00000448065 339 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 SNORD19B-201ENST00000459623 84 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 RN7SL283P-201ENST00000489055 303 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AC006445.2-201ENST00000510061 472 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 EIF4BP1-201ENST00000554881 351 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AL355598.1-201ENST00000604169 202 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AC123912.5-201ENST00000605470 343 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AC116312.1-201ENST00000606841 314 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AL138880.2-201ENST00000616214 239 ntBASIC3.22□□□□□ -1.89
VPS4AQ9UN37 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS4AQ9UN37 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 MTND5P7-201ENST00000413558 1798 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RNA5SP197-201ENST00000363357 119 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 Y_RNA.384-201ENST00000383909 102 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RNU1-73P-201ENST00000383971 164 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RNU6-214P-201ENST00000384130 107 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 Y_RNA.482-201ENST00000384377 111 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 SNORD116-29-201ENST00000384516 83 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RNU6-95P-201ENST00000384697 107 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 MIR518D-201ENST00000385014 87 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RPL23AP22-201ENST00000437556 453 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RNU7-152P-201ENST00000458982 64 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 Y_RNA.635-201ENST00000459041 101 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AC104472.2-201ENST00000469035 601 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RPS27P27-201ENST00000498779 255 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 HMGN1P13-201ENST00000505795 138 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RN7SKP24-201ENST00000515888 284 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 SNORD59.2-201ENST00000516873 68 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RNU6-273P-201ENST00000516937 96 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AC025423.5-201ENST00000550230 219 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AC026371.1-201ENST00000551867 419 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 H3F3AP1-201ENST00000559984 334 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 MIR3609-201ENST00000582661 80 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AP000787.2-201ENST00000604432 568 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AC008962.1-201ENST00000605729 304 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 RNU6-85P-201ENST00000605989 107 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AL133255.1-201ENST00000606374 441 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 MIR6076-201ENST00000617521 113 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AL359757.2-201ENST00000624309 274 ntBASIC3.21□□□□□ -1.9
VPS4AQ9UN37 AC110774.1-201ENST00000623567 2018 ntBASIC3.2□□□□□ -1.9
VPS4AQ9UN37 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS4AQ9UN37 FAM35BP-202ENST00000497389 3337 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms