Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 FO082796.1-201ENST00000523795 183 ntBASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 AP004607.1-201ENST00000524456 203 ntBASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 AC079600.2-201ENST00000550076 130 ntBASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 AL157687.1-201ENST00000554853 619 ntBASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 AL162413.1-201ENST00000603198 110 ntBASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 AL359198.2-201ENST00000611836 194 ntBASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 YWHAEP7-203ENST00000622054 312 ntBASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
LIMA1Q9UHB6 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 RNU6-1283P-201ENST00000365314 105 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 RNU6-1083P-201ENST00000384022 107 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 RNU6-748P-201ENST00000384648 107 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 U3.26-201ENST00000391236 204 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 MTATP6P13-201ENST00000438531 667 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AC011816.1-201ENST00000441346 546 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AL135938.1-201ENST00000443141 297 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 HIGD1AP2-201ENST00000446367 280 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AC133134.1-201ENST00000466800 359 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AC008571.1-201ENST00000467232 300 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 MRPL42P6-201ENST00000486397 371 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 MTAPP1-201ENST00000489154 819 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 SNORA31.6-201ENST00000516241 130 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AL356575.1-201ENST00000603008 283 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AL137843.1-201ENST00000605078 385 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 AL162274.2-201ENST00000614406 332 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 U6atac.1-201ENST00000616025 117 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 MIR1321-201ENST00000637766 79 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 MIR7515-201ENST00000637837 67 ntBASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
LIMA1Q9UHB6 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 Y_RNA.9-201ENST00000362354 101 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 RNU6-942P-201ENST00000363002 107 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 RNU6-1090P-201ENST00000364065 94 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 RNU1-140P-201ENST00000365040 165 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 Y_RNA.324-201ENST00000365165 102 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 Y_RNA.480-201ENST00000384364 102 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AL513475.1-201ENST00000406602 315 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 RNU6-908P-201ENST00000410160 94 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 BX682237.1-201ENST00000415016 335 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 USP9YP27-201ENST00000418455 438 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 RNU7-167P-201ENST00000459160 62 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AL121769.1-201ENST00000469473 401 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 SRIP1-201ENST00000489235 288 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AC114781.4-201ENST00000513707 639 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 RNU6-718P-201ENST00000516166 105 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 RNA5SP282-201ENST00000516355 108 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 RNU6-56P-201ENST00000516986 93 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AC109635.3-201ENST00000529536 185 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AL138976.2-201ENST00000563989 694 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 MIR4325-201ENST00000583049 90 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 U2.17-201ENST00000611454 95 ntBASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
LIMA1Q9UHB6 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 MIR208A-201ENST00000362287 71 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 RNU6-858P-201ENST00000362436 107 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 RNU4-20P-201ENST00000365601 151 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 Y_RNA.402-201ENST00000383972 102 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 SNORA44-201ENST00000384584 132 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 AL356057.3-201ENST00000402607 340 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 RNU6-1068P-201ENST00000410958 103 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 MTCO1P20-201ENST00000425366 358 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 USP9YP18-201ENST00000425912 695 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 AC087499.2-201ENST00000432861 149 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 AL121601.2-201ENST00000438019 707 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 AC004383.1-201ENST00000438135 289 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 Z96811.1-201ENST00000445880 108 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 FGF7P6-202ENST00000451282 293 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 AL441985.1-201ENST00000457727 251 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 AP001324.2-201ENST00000461163 319 ntBASIC2.87□□□□□ -1.95
LIMA1Q9UHB6 DYNLL1P5-201ENST00000467158 270 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 153.5 ms