Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL162713.1-201ENST00000604480 262 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 AC084757.4-201ENST00000616350 526 ntBASIC5□□□□□ -1.61
LIMD1Q9UGP4 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
LIMD1Q9UGP4 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
LIMD1Q9UGP4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
LIMD1Q9UGP4 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AL133383.2-201ENST00000622958 2336 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 RNU4-84P-201ENST00000364200 139 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 RNA5SP509-201ENST00000364577 119 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 SNORA1.3-201ENST00000384676 136 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 RNU6-1199P-201ENST00000411249 104 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AC104333.2-201ENST00000422630 192 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 RPS15AP5-201ENST00000436276 388 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AC000111.2-201ENST00000448200 210 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 RPS4XP13-201ENST00000483219 789 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 RN7SL441P-201ENST00000492388 296 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 SNORA31.16-201ENST00000516773 139 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 IGKV2D-19-201ENST00000523346 262 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AC105137.2-201ENST00000569073 466 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 MIR4472-2-201ENST00000582069 67 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 DEFB117-201ENST00000602356 141 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AL022401.1-201ENST00000619498 108 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 SNORD98-201ENST00000636377 67 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 SALL4P2-201ENST00000423288 2910 ntBASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
LIMD1Q9UGP4 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 RNU6-799P-201ENST00000363567 107 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 RNU6-1154P-201ENST00000391001 104 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 U3.26-201ENST00000391236 204 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 MIR208B-201ENST00000401172 77 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 UQCRHP4-201ENST00000471686 272 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 RNU6-966P-201ENST00000516479 104 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 MIR3923-201ENST00000579521 83 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 MIR3684-201ENST00000579779 74 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 MIR3690-201ENST00000580266 75 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 VN1R85P-201ENST00000601587 426 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 AC023043.4-201ENST00000612081 449 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 AC073308.1-201ENST00000623696 305 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 AP001642.1-201ENST00000624727 2117 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 CUL1P1-201ENST00000509510 2425 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 AC004944.1-201ENST00000517807 3059 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 AC010733.2-201ENST00000589496 5702 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 MAPK10-349ENST00000641767 3661 ntBASIC4.98□□□□□ -1.61
LIMD1Q9UGP4 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 RNU1-64P-201ENST00000365443 163 ntBASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 RNU6-1264P-201ENST00000383891 107 ntBASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 MIR134-201ENST00000385258 73 ntBASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 RNU2-2P-201ENST00000410396 191 ntBASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 CRYBB2P1-203ENST00000415709 538 ntBASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 RPL21P129-201ENST00000491732 478 ntBASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 AIG1P1-201ENST00000503376 148 ntBASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 AC091868.1-201ENST00000508746 304 ntBASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.97□□□□□ -1.61
LIMD1Q9UGP4 HIGD1AP1-201ENST00000550979 275 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms