Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RPL30P14-201ENST00000482744 348 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 RPS27AP10-201ENST00000496103 208 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AC097473.1-201ENST00000508142 408 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 LINC00933-203ENST00000559812 219 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 CYP2C61P-201ENST00000604072 290 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 MTND4LP5-201ENST00000605152 292 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.812-201ENST00000610788 101 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AL591516.1-201ENST00000611326 274 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.784-201ENST00000613803 101 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.787-201ENST00000616522 101 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.780-201ENST00000617336 101 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.801-201ENST00000619005 101 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AC073308.1-201ENST00000623696 305 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 AL356274.2-201ENST00000624379 3752 ntBASIC3.54□□□□□ -1.84
TDP1Q9NUW8 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
TDP1Q9NUW8 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.197-201ENST00000364004 102 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 RNU6-898P-201ENST00000365627 104 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.395-201ENST00000383945 109 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 RNU6-1106P-201ENST00000390845 107 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 NDUFB4P4-201ENST00000404822 243 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AL590004.1-201ENST00000405321 300 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 U3.37-201ENST00000408528 213 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 NDUFS5P4-201ENST00000412983 318 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AL133396.1-201ENST00000432048 687 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 SNRPEP4-201ENST00000435815 279 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 SETP5-201ENST00000437270 562 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AC006028.1-201ENST00000438379 402 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.631-201ENST00000459607 101 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AC109479.2-201ENST00000517842 174 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AC026333.2-201ENST00000542164 106 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 MIR5680-201ENST00000577577 84 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 MIR3171-201ENST00000584270 74 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AC012493.2-201ENST00000595083 291 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AC009314.1-201ENST00000603871 304 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 SCARNA4-202ENST00000625402 129 ntBASIC3.53□□□□□ -1.84
TDP1Q9NUW8 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.53□□□□□ -1.84
TDP1Q9NUW8 AC091152.2-201ENST00000591628 2569 ntBASIC3.53□□□□□ -1.85
TDP1Q9NUW8 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 RNU5E-7P-201ENST00000365290 117 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 RNU6-890P-201ENST00000384121 107 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 RNU6-842P-201ENST00000384269 107 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 RNU6-790P-201ENST00000384479 105 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 SNORA48.2-201ENST00000390926 124 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 RPL23AP82-202ENST00000427528 469 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 Z82205.1-201ENST00000428456 297 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AC013470.1-201ENST00000453438 462 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 RPL26P9-201ENST00000457466 433 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AC110794.1-201ENST00000505816 425 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 PTP4A1P4-201ENST00000512479 322 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AC103996.1-201ENST00000555468 102 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AL391261.3-201ENST00000557194 520 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 CPDP1-201ENST00000579660 283 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AC011471.1-201ENST00000585766 187 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 SNRPGP17-201ENST00000603780 214 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AC092608.2-201ENST00000624427 218 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AC073073.2-201ENST00000609827 2578 ntBASIC3.52□□□□□ -1.85
TDP1Q9NUW8 AC068647.1-201ENST00000489539 2265 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 RNU6-78P-201ENST00000362897 107 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 RNU6-428P-201ENST00000362942 107 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 Y_RNA.445-201ENST00000384168 102 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 MIR559-201ENST00000385188 96 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 Z98941.1-201ENST00000407764 100 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.51□□□□□ -1.85
TDP1Q9NUW8 RPS15AP10-201ENST00000432472 382 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 DAP3P1-201ENST00000441522 278 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 SSXP4-201ENST00000451349 245 ntBASIC3.51□□□□□ -1.85
TDP1Q9NUW8 BTF3P15-201ENST00000455606 336 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms