Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MIR5701-2-201ENST00000615634 82 ntBASIC4.6□□□□□ -1.67
TRAIPQ9BWF2 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.6□□□□□ -1.67
TRAIPQ9BWF2 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
TRAIPQ9BWF2 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.6□□□□□ -1.67
TRAIPQ9BWF2 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
TRAIPQ9BWF2 AC103988.1-201ENST00000566382 2177 ntBASIC4.6□□□□□ -1.67
TRAIPQ9BWF2 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 SNORA69.1-201ENST00000390904 137 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 MIR1911-201ENST00000410783 80 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AL117339.2-201ENST00000430475 180 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 HMGN2P31-201ENST00000432430 273 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AL160004.2-201ENST00000432935 350 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AL049830.2-201ENST00000480072 201 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AC091874.1-201ENST00000511402 339 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 RPL23AP78-201ENST00000599928 470 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 MIR7151-201ENST00000617477 60 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 SCARNA4-201ENST00000629045 128 ntBASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
TRAIPQ9BWF2 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRAIPQ9BWF2 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRAIPQ9BWF2 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.59□□□□□ -1.68
TRAIPQ9BWF2 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
TRAIPQ9BWF2 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 AC005592.1-201ENST00000566527 1640 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 AL359854.1-201ENST00000614203 1594 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 Y_RNA.158-201ENST00000363651 101 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 RNA5SP130-201ENST00000364431 114 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 RNA5SP283-201ENST00000365604 119 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 Y_RNA.405-201ENST00000383979 100 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 Y_RNA.424-201ENST00000384063 103 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 Y_RNA.451-201ENST00000384200 100 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 Y_RNA.524-201ENST00000384564 100 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 Y_RNA.561-201ENST00000384694 100 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 SNORA12.2-201ENST00000391040 156 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 AL159169.1-201ENST00000421119 127 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 HLA-N-201ENST00000437516 135 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 RNU7-87P-201ENST00000459343 62 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 AC112771.1-201ENST00000463581 102 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 RPL23AP75-201ENST00000491601 451 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 RNA5SP154-201ENST00000516193 111 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 IFITM8P-201ENST00000522529 394 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 MIR3136-201ENST00000583498 78 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 MIR4765-201ENST00000585007 77 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 AC073410.2-201ENST00000603240 332 ntBASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
TRAIPQ9BWF2 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 MTND4P1-201ENST00000457501 1466 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AL109809.4-201ENST00000603520 2185 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 SNORA29-201ENST00000384183 140 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 Y_RNA.496-201ENST00000384444 101 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 SNORD66.1-201ENST00000391230 76 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 MIR1179-201ENST00000408703 91 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 RNU6-1140P-201ENST00000410517 106 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AL590135.1-201ENST00000422215 156 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AC019205.3-201ENST00000424573 156 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AC009296.1-201ENST00000443146 155 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AC016700.2-201ENST00000446011 156 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 RNU7-169P-201ENST00000459456 61 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 RPS29P12-201ENST00000460178 152 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 RN7SL604P-201ENST00000492589 296 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 RNU1-30P-201ENST00000606575 163 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AC091925.1-201ENST00000623204 462 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 AL606534.2-204ENST00000635008 178 ntBASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC4.57□□□□□ -1.68
TRAIPQ9BWF2 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms