Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 RNU6-1029P-201ENST00000384109 107 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 BTF3P7-201ENST00000407097 488 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 RAP1BP3-201ENST00000407180 549 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 RNU2-29P-201ENST00000410423 189 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AC016831.2-201ENST00000417179 352 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 MTCO3P30-201ENST00000426425 670 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 MTCO2P19-201ENST00000427513 598 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AL669831.1-202ENST00000428504 417 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AL358934.1-201ENST00000432346 324 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 GTF2IP13-201ENST00000438487 386 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 RPS3AP12-201ENST00000443616 753 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AP001324.2-201ENST00000461163 319 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AL121769.1-201ENST00000469473 401 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 RNU1-86P-201ENST00000516108 154 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 MIR892C-201ENST00000516410 77 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 RNU1-107P-201ENST00000516617 154 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AP005435.4-201ENST00000529514 284 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AP003034.1-201ENST00000534621 422 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AC243972.3-201ENST00000539655 198 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AC024909.2-201ENST00000553035 286 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AC023824.2-201ENST00000566185 400 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 MIR4765-201ENST00000585007 77 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AC073539.2-201ENST00000597113 165 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AC025449.1-201ENST00000603896 529 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AL670379.4-201ENST00000605279 254 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 NDUFA8P1-201ENST00000605525 367 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 AL359851.1-201ENST00000569460 4997 ntBASIC1.9□□□□□ -2.11
RPUSD4Q96CM3 ZNF680P1-201ENST00000436625 1469 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 RNU6-1287P-201ENST00000362914 107 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 RNU6-843P-201ENST00000384454 104 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 RNU6-1060P-201ENST00000384664 107 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 RNU6-1179P-201ENST00000384667 107 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 MIR10A-201ENST00000385043 110 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 GSTA9P-201ENST00000406231 611 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 RNA5SP111-201ENST00000411386 101 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 HMGB3P2-201ENST00000411913 584 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 BX276092.3-201ENST00000424182 230 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC000111.3-201ENST00000433478 193 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 FABP5P14-201ENST00000437273 393 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 DNAJC19P4-201ENST00000440115 345 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 MTND2P22-201ENST00000444325 1033 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC006026.2-201ENST00000457376 180 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AL162395.1-201ENST00000457882 422 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 MED28P2-201ENST00000475771 317 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 RPL22P13-201ENST00000493291 347 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC079382.1-201ENST00000493346 557 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC023141.11-201ENST00000508864 202 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC008526.1-201ENST00000509149 338 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC117522.2-201ENST00000510049 657 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC010493.1-201ENST00000513479 292 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 RNU6-405P-201ENST00000516637 110 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 MIR514B-201ENST00000516774 80 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC109329.1-201ENST00000518744 317 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC087683.1-201ENST00000591187 441 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AL391646.1-201ENST00000603860 190 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 APOOP1-201ENST00000604695 592 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AL021997.1-201ENST00000605757 193 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC080013.6-201ENST00000606185 215 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC097065.2-201ENST00000608159 533 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC017083.3-201ENST00000609955 700 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC092608.2-201ENST00000624427 218 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 MIR3529-201ENST00000637713 78 ntBASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.89□□□□□ -2.11
RPUSD4Q96CM3 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
RPUSD4Q96CM3 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.88□□□□□ -2.11
RPUSD4Q96CM3 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms