Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RPL23AP94-201ENST00000512518 302 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 RNU7-4P-201ENST00000516961 62 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AC040926.1-201ENST00000530195 238 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AC005951.2-201ENST00000576282 495 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AC020914.4-201ENST00000597690 277 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 AL513302.2-201ENST00000562313 1842 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 Y_RNA.48-201ENST00000362710 103 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 RNU1-18P-201ENST00000363062 164 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 RNY1P16-201ENST00000363063 111 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 SNORA36C-201ENST00000384289 132 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 MIR124-3-201ENST00000384866 87 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 AL603908.1-201ENST00000406098 201 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 RNU2-3P-201ENST00000410144 191 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 CHEK2P4-201ENST00000450340 246 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 NDUFS5P3-201ENST00000450668 321 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 MTCO3P8-201ENST00000453691 755 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 AC025445.1-201ENST00000502728 300 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 RNU6-927P-201ENST00000516199 100 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 RNU6-143P-201ENST00000516942 93 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 HIGD1AP1-201ENST00000550979 275 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 AC078938.1-201ENST00000620993 318 ntBASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USHBP1Q8N6Y0 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 RNA5SP502-201ENST00000362694 119 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 Y_RNA.276-201ENST00000364732 109 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 U3.15-201ENST00000365398 212 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 RNU6-472P-201ENST00000384299 107 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 RNU4-70P-201ENST00000384579 139 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 Y_RNA.551-201ENST00000384661 102 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 MIR1302-6-201ENST00000408466 90 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 AC006989.1-201ENST00000427212 131 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 MTATP6P4-201ENST00000427725 675 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 AL353997.1-201ENST00000432936 108 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 RPL26P6-201ENST00000440913 438 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 AC025750.2-201ENST00000442609 450 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 RNU6-1132P-201ENST00000459214 107 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 RN7SL863P-201ENST00000462370 296 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 IGHV3-76-201ENST00000522465 295 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 CBX3P8-201ENST00000532412 525 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 AC023157.2-201ENST00000540596 141 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 AC004024.1-201ENST00000549244 247 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 AC078899.3-201ENST00000599065 212 ntBASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.37□□□□□ -1.71
USHBP1Q8N6Y0 ZNF72P-201ENST00000425869 1908 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AC233263.6-201ENST00000631132 1963 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 UBE2L2-201ENST00000254302 429 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 MIR422A-201ENST00000362286 90 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 Y_RNA.222-201ENST00000364264 102 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 RNU4-42P-201ENST00000364738 142 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 Y_RNA.461-201ENST00000384263 103 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 Y_RNA.526-201ENST00000384572 110 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 RNU6-1179P-201ENST00000384667 107 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AC087588.1-201ENST00000462203 316 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 RPL27AP5-201ENST00000469428 449 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 OR5D17P-201ENST00000531492 978 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 MIR1273C-201ENST00000578669 77 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 LARP7P3-201ENST00000579888 337 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 MIR4298-201ENST00000584380 73 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AC073657.2-201ENST00000605661 303 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 HMGB1P50-201ENST00000605814 607 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 RNVU1-4-201ENST00000612985 164 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AC138627.2-201ENST00000624202 601 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AL365361.1-201ENST00000566942 3481 ntBASIC4.36□□□□□ -1.71
USHBP1Q8N6Y0 AL136964.1-201ENST00000622038 2990 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms