Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 ZNF72P-201ENST00000425869 1908 ntBASIC3.87□□□□□ -1.79
USP53Q70EK8 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
USP53Q70EK8 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP53Q70EK8 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USP53Q70EK8 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USP53Q70EK8 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USP53Q70EK8 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USP53Q70EK8 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.86□□□□□ -1.79
USP53Q70EK8 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
USP53Q70EK8 Y_RNA.123-201ENST00000363338 102 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 RNU6-527P-201ENST00000363425 104 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 Y_RNA.152-201ENST00000363578 100 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 SNORA73.2-201ENST00000364946 201 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
USP53Q70EK8 RNU6-26P-201ENST00000383985 107 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 SNORA1.3-201ENST00000384676 136 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
USP53Q70EK8 RNU6-1109P-201ENST00000391187 107 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 SAR1AP2-201ENST00000392696 594 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 BTF3L4P2-201ENST00000392798 346 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 RPS4XP3-201ENST00000398541 413 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 MTCYBP2-201ENST00000407745 171 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 RNA5SP494-201ENST00000410653 129 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 AC099548.1-201ENST00000421443 426 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.86□□□□□ -1.79
USP53Q70EK8 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.86□□□□□ -1.79
USP53Q70EK8 RN7SKP210-201ENST00000459176 261 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.86□□□□□ -1.79
USP53Q70EK8 RPL23AP49-201ENST00000492925 468 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 RPL22P13-201ENST00000493291 347 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 RN7SL323P-201ENST00000494712 295 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 AC006445.2-201ENST00000510061 472 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 FTH1P9-201ENST00000513251 355 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 RNU6-911P-201ENST00000516523 104 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 Y_RNA.715-201ENST00000517082 110 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 SNORA70.24-201ENST00000517233 118 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.86□□□□□ -1.79
USP53Q70EK8 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.86□□□□□ -1.79
USP53Q70EK8 AL590705.4-201ENST00000532209 134 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
USP53Q70EK8 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.86□□□□□ -1.79
USP53Q70EK8 AL121655.1-201ENST00000605811 308 ntBASIC3.86□□□□□ -1.79
USP53Q70EK8 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.86□□□□□ -1.79
USP53Q70EK8 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
USP53Q70EK8 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
USP53Q70EK8 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.86□□□□□ -1.79
USP53Q70EK8 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP53Q70EK8 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP53Q70EK8 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.85□□□□□ -1.79
USP53Q70EK8 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
USP53Q70EK8 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.85□□□□□ -1.79
USP53Q70EK8 MTND5P7-201ENST00000413558 1798 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 RNU1-100P-201ENST00000365255 165 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 MIR491-201ENST00000384877 84 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 RN7SKP156-201ENST00000410308 342 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 RN7SKP53-201ENST00000411337 315 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.85□□□□□ -1.79
USP53Q70EK8 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.85□□□□□ -1.79
USP53Q70EK8 RPL26P9-201ENST00000457466 433 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 RNU7-169P-201ENST00000459456 61 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.85□□□□□ -1.79
USP53Q70EK8 RN7SL271P-201ENST00000487601 295 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 RPS26P15-201ENST00000488067 348 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 AC025554.1-201ENST00000505641 188 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 AC110768.1-201ENST00000509222 400 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 IGKV2-38-201ENST00000517443 247 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 AC131281.1-201ENST00000522984 164 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 SYF2P1-201ENST00000550658 413 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 NACAP3-201ENST00000552100 481 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 MIR4644-201ENST00000579929 84 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 AC006077.1-201ENST00000604746 343 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 U2.1-201ENST00000618978 145 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 AC007792.1-201ENST00000623023 402 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.85□□□□□ -1.79
USP53Q70EK8 AC009093.8-201ENST00000641769 292 ntBASIC3.85□□□□□ -1.79
USP53Q70EK8 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.85□□□□□ -1.79
USP53Q70EK8 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
USP53Q70EK8 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.85□□□□□ -1.79
USP53Q70EK8 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
USP53Q70EK8 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP53Q70EK8 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.84□□□□□ -1.79
USP53Q70EK8 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
USP53Q70EK8 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP53Q70EK8 RNU6-702P-201ENST00000364982 107 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 Y_RNA.526-201ENST00000384572 110 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 MIR34B-201ENST00000385076 84 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 SNORA69.1-201ENST00000390904 137 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
USP53Q70EK8 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP53Q70EK8 AL591043.1-201ENST00000432461 424 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP53Q70EK8 AC125238.1-201ENST00000448842 249 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 RPS29P20-201ENST00000489592 171 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.84□□□□□ -1.79
USP53Q70EK8 MIR2114-201ENST00000516645 80 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.84□□□□□ -1.79
USP53Q70EK8 CYCSP30-201ENST00000546447 172 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AL391261.3-201ENST00000557194 520 ntBASIC3.84□□□□□ -1.79
USP53Q70EK8 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.84□□□□□ -1.79
USP53Q70EK8 MIR3609-201ENST00000582661 80 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 181.3 ms