Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL592114.1-201ENST00000403842 483 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 Y_RNA.623-201ENST00000411128 95 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 MTND1P23-201ENST00000416931 372 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 SNRPEP10-201ENST00000420249 274 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 HMGB1P9-201ENST00000429856 646 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 AC128713.1-201ENST00000471495 306 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 RPL23AP11-201ENST00000475260 469 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 HMGB1P30-201ENST00000492455 606 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 RPL38P4-201ENST00000502376 214 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 AC074344.1-201ENST00000512823 224 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 AC114781.4-201ENST00000513707 639 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 NACAP3-201ENST00000552100 481 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 AC010653.1-201ENST00000571108 881 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 U2.17-201ENST00000611454 95 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 RMST_3.1-201ENST00000611651 109 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 AC022418.1-201ENST00000624118 445 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 AC092593.1-201ENST00000515413 1815 ntBASIC2.95□□□□□ -1.94
USP41Q3LFD5 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
USP41Q3LFD5 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 AC093536.2-201ENST00000565257 1406 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 Y_RNA.231-201ENST00000364358 102 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 RNU6-1303P-201ENST00000364841 107 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 AL445529.1-201ENST00000398713 389 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 BX682237.1-201ENST00000415016 335 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 BPY2DP-201ENST00000422208 265 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 AC104332.2-201ENST00000429959 156 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 AL513043.1-201ENST00000439124 535 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 TBCAP3-201ENST00000512475 312 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 RNU1-86P-201ENST00000516108 154 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 RNU1-107P-201ENST00000516617 154 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 AL118558.2-201ENST00000556294 238 ntBASIC2.94□□□□□ -1.94
USP41Q3LFD5 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
USP41Q3LFD5 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
USP41Q3LFD5 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
USP41Q3LFD5 ADAM3A-203ENST00000461344 2157 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 RNA5SP139-201ENST00000364340 117 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 Y_RNA.378-201ENST00000365652 113 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 MIR10A-201ENST00000385043 110 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 RNA5SP219-201ENST00000390940 113 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AL353621.1-201ENST00000418219 243 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 PGBD4P6-201ENST00000421501 610 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 MTND1P2-201ENST00000430604 821 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 RPS15AP5-201ENST00000436276 388 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 AL590639.1-201ENST00000456484 337 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 RPL21P93-201ENST00000480465 489 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AC069439.1-201ENST00000494739 167 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AC091885.1-201ENST00000506658 268 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 MIR892C-201ENST00000516410 77 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 ZNF861P-201ENST00000588126 639 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AC023043.3-201ENST00000593113 385 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AC090115.4-201ENST00000609970 188 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AL020991.1-201ENST00000612314 373 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AL031601.2-202ENST00000622650 282 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 AC090617.7-201ENST00000623952 126 ntBASIC2.93□□□□□ -1.94
USP41Q3LFD5 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
USP41Q3LFD5 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.93□□□□□ -1.94
USP41Q3LFD5 AC110491.1-201ENST00000562191 2010 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USP41Q3LFD5 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 SNORD14B-201ENST00000364533 90 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 Z98749.2-208ENST00000381646 500 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 MIR514A2-201ENST00000385131 88 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 MIR514A3-201ENST00000385132 88 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USP41Q3LFD5 RNU2-49P-201ENST00000410666 184 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.92□□□□□ -1.94
USP41Q3LFD5 AL451074.5-201ENST00000415894 435 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 AL627311.1-201ENST00000431514 115 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 ERLEC1P1-201ENST00000433806 578 ntBASIC2.92□□□□□ -1.94
USP41Q3LFD5 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms