Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC103705.1-201ENST00000619013 241 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 AL031601.2-202ENST00000622650 282 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.93□□□□□ -1.94
COL28A1Q2UY09 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.93□□□□□ -1.94
COL28A1Q2UY09 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.93□□□□□ -1.94
COL28A1Q2UY09 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
COL28A1Q2UY09 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 AC121333.1-201ENST00000567488 2709 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 U3.12-201ENST00000364498 214 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 CD24P4-201ENST00000382840 243 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 RNU6-1027P-201ENST00000383998 107 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 MIR196B-201ENST00000384852 84 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 BTF3P15-201ENST00000455606 336 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 HMGN2P26-201ENST00000463169 339 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 DYNLL1P5-201ENST00000467158 270 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 RNU1-143P-201ENST00000516296 146 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 CYCSP27-201ENST00000527643 293 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 AC006199.1-201ENST00000548728 219 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 AL118558.2-201ENST00000556294 238 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 AP001094.1-201ENST00000579805 193 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 AP000907.4-201ENST00000604143 237 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 Z82243.1-201ENST00000609432 473 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 U1.23-201ENST00000610293 146 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 uc_338.25-201ENST00000613756 156 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 RNU1-68P-201ENST00000615382 146 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 U1.39-201ENST00000621562 146 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 MIR3199-2-201ENST00000636243 86 ntBASIC2.92□□□□□ -1.94
COL28A1Q2UY09 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL28A1Q2UY09 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 Y_RNA.157-201ENST00000363638 102 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 RNU6-522P-201ENST00000364497 107 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 XGY1-201ENST00000381172 446 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 MIR10A-201ENST00000385043 110 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 RNU6-750P-201ENST00000390946 107 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 RAP1BP3-201ENST00000407180 549 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 POLHP1-201ENST00000411806 470 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 RPLP0P7-201ENST00000416050 667 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 MTND1P2-201ENST00000430604 821 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 MTCO3P18-201ENST00000440206 761 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 WASF1P1-201ENST00000447560 1131 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 ANXA2P1-201ENST00000505539 926 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AC113155.1-201ENST00000511141 769 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 RNU6-189P-201ENST00000516120 101 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AL158827.2-201ENST00000602494 330 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AL020991.1-201ENST00000612314 373 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 SCARNA4-202ENST00000625402 129 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AL691447.3-201ENST00000635020 330 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AC110079.1-202ENST00000635213 138 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 MIR3662-201ENST00000637030 95 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 AP003122.5-201ENST00000527668 3766 ntBASIC2.91□□□□□ -1.94
COL28A1Q2UY09 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
COL28A1Q2UY09 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.94
COL28A1Q2UY09 AC099654.7-201ENST00000635788 2127 ntBASIC2.9□□□□□ -1.94
COL28A1Q2UY09 ADAM3A-203ENST00000461344 2157 ntBASIC2.9□□□□□ -1.94
COL28A1Q2UY09 FAM35CP-201ENST00000554755 2470 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 U8.2-201ENST00000363156 134 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 Y_RNA.167-201ENST00000363735 109 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 MIR767-201ENST00000390228 109 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 RPS4XP7-201ENST00000406274 780 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 U3.37-201ENST00000408528 213 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.9□□□□□ -1.95
COL28A1Q2UY09 MRPS10P2-201ENST00000431226 381 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 AL121601.2-201ENST00000438019 707 ntBASIC2.9□□□□□ -1.95
COL28A1Q2UY09 RBMX2P4-201ENST00000441256 376 ntBASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms