| RUNX1T1 | Q06455 | RNU6-89P-201 | ENST00000606519 | 100 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC022418.1-201 | ENST00000624118 | 445 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | PHTF2-202 | ENST00000275575 | 4541 nt | TSL 1 (best) BASIC | 2.85 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | HSPA8P4-201 | ENST00000511877 | 1920 nt | BASIC | 2.85 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | OR56A5-201 | ENST00000340110 | 738 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | MIR412-201 | ENST00000362142 | 91 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | RNU4-20P-201 | ENST00000365601 | 151 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | RNA5SP274-201 | ENST00000410484 | 108 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AL109924.3-201 | ENST00000413324 | 393 nt | TSL 2 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | RPL26P27-201 | ENST00000414397 | 437 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AL355314.2-201 | ENST00000427182 | 436 nt | TSL 3 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | GYPB-201 | ENST00000429670 | 239 nt | TSL 1 (best) BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC093083.1-201 | ENST00000438633 | 347 nt | TSL 3 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | Z75741.1-201 | ENST00000446793 | 314 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | RNU7-167P-201 | ENST00000459160 | 62 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | RNU6-1208P-201 | ENST00000459588 | 107 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | HMGN2P26-201 | ENST00000463169 | 339 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC008571.1-201 | ENST00000467232 | 300 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC092919.1-201 | ENST00000467896 | 229 nt | TSL 2 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AP000852.1-201 | ENST00000472460 | 573 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | RPL31P41-201 | ENST00000477967 | 372 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | MTCYBP18-201 | ENST00000501056 | 747 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | YWHAEP4-201 | ENST00000505390 | 198 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC018710.1-201 | ENST00000506509 | 158 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC110767.1-201 | ENST00000508374 | 239 nt | TSL 3 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | HIGD1AP13-201 | ENST00000509878 | 289 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC008549.1-201 | ENST00000512900 | 643 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | RNU6-826P-201 | ENST00000516827 | 104 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | LINC02253-201 | ENST00000559321 | 448 nt | TSL 2 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | MTCO3P23-201 | ENST00000561363 | 289 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC007948.1-201 | ENST00000581632 | 242 nt | TSL 5 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC010928.1-202 | ENST00000589354 | 473 nt | TSL 3 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC012119.1-201 | ENST00000603184 | 222 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | uc_338.25-201 | ENST00000613756 | 156 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC105265.4-201 | ENST00000618391 | 306 nt | TSL 5 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC159540.2-206 | ENST00000619371 | 355 nt | TSL 3 BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AL137790.1-201 | ENST00000634283 | 177 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | GYPB-216 | ENST00000638448 | 363 nt | APPRIS P1 TSL 1 (best) BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | AC009487.2-201 | ENST00000420969 | 6821 nt | BASIC | 2.84 | □□□□□ -1.95 | | |
| RUNX1T1 | Q06455 | MTND4P35-201 | ENST00000604257 | 1375 nt | BASIC | 2.84 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | CHD9-202 | ENST00000398510 | 11337 nt | TSL 1 (best) BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | Z82195.2-201 | ENST00000612348 | 18351 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | TCF12-203 | ENST00000343827 | 3956 nt | TSL 1 (best) BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | HSPA4L-202 | ENST00000505726 | 2639 nt | TSL 2 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | PSG1-205 | ENST00000595124 | 1692 nt | TSL 2 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | EDDM3A-201 | ENST00000326842 | 927 nt | APPRIS P1 TSL 1 (best) BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | SNORA72.1-201 | ENST00000363485 | 129 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | MT-TL1-201 | ENST00000386347 | 75 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | RAP1BP3-201 | ENST00000407180 | 549 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | SNORD88.1-201 | ENST00000408684 | 91 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | RPL21P90-201 | ENST00000415692 | 466 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC009414.1-201 | ENST00000427200 | 443 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AL121890.1-201 | ENST00000435457 | 205 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | BRK1P2-201 | ENST00000442875 | 223 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | PRPS1P1-201 | ENST00000445305 | 876 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC007547.1-201 | ENST00000462177 | 490 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | OARD1-209 | ENST00000471367 | 401 nt | TSL 2 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AP004217.1-201 | ENST00000480579 | 346 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | SAR1B-211 | ENST00000509937 | 455 nt | TSL 5 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | LINC02122-201 | ENST00000511395 | 577 nt | TSL 4 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | RNU6-189P-201 | ENST00000516120 | 101 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AP000462.2-203 | ENST00000540545 | 715 nt | TSL 5 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC022080.3-201 | ENST00000544433 | 482 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | OR11H5P-201 | ENST00000554039 | 926 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC018638.8-201 | ENST00000588755 | 281 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC130469.1-201 | ENST00000597256 | 388 nt | TSL 5 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC092807.2-201 | ENST00000609367 | 243 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC093913.1-201 | ENST00000614178 | 329 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | DLX6-AS1_1.1-201 | ENST00000621599 | 180 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AP003400.5-201 | ENST00000624827 | 617 nt | BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AL109837.2-201 | ENST00000632608 | 295 nt | TSL 3 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | BAZ2B-202 | ENST00000343439 | 2364 nt | TSL 5 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | LIPI-203 | ENST00000536861 | 1529 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | EFR3A-202 | ENST00000519656 | 5247 nt | TSL 1 (best) BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | PKIB-201 | ENST00000258014 | 1595 nt | TSL 2 BASIC | 2.83 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | OR4K2-204 | ENST00000641885 | 8681 nt | APPRIS P1 BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | PIK3C2G-206 | ENST00000538779 | 4963 nt | TSL 5 BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | CDK1-201 | ENST00000316629 | 1733 nt | TSL 5 BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | SLC30A6-202 | ENST00000357055 | 4758 nt | TSL 2 BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC121333.1-201 | ENST00000567488 | 2709 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | C5orf46-201 | ENST00000318315 | 506 nt | APPRIS P2 TSL 1 (best) BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | Y_RNA.86-201 | ENST00000363020 | 111 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | RNA5SP393-201 | ENST00000363423 | 117 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | Y_RNA.160-201 | ENST00000363677 | 92 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | RNU6-371P-201 | ENST00000364283 | 108 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | BTLA-202 | ENST00000383680 | 726 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | RNU6-332P-201 | ENST00000391193 | 108 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | POLHP1-201 | ENST00000411806 | 470 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | NDUFS5P4-201 | ENST00000412983 | 318 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | RPL21P111-201 | ENST00000418453 | 477 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC099548.1-201 | ENST00000421443 | 426 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC098614.2-201 | ENST00000426040 | 255 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | TOMM20P4-201 | ENST00000427861 | 435 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AL669831.1-202 | ENST00000428504 | 417 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | SUMO1P4-201 | ENST00000429430 | 302 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | HMGB1P9-201 | ENST00000429856 | 646 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | GTF2IP13-201 | ENST00000438487 | 386 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC009296.1-201 | ENST00000443146 | 155 nt | BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | AC073342.1-202 | ENST00000446192 | 457 nt | TSL 5 BASIC | 2.82 | □□□□□ -1.96 | | |
| RUNX1T1 | Q06455 | MTND5P20-201 | ENST00000448677 | 143 nt | BASIC | 2.82 | □□□□□ -1.96 | | |