Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MIR6715A-201ENST00000615929 79 ntBASIC3.07□□□□□ -1.92
HDAC4P56524 ATP5A1P2-202ENST00000616464 443 ntBASIC3.07□□□□□ -1.92
HDAC4P56524 AC092794.2-201ENST00000620933 563 ntBASIC3.07□□□□□ -1.92
HDAC4P56524 AL359757.2-201ENST00000624309 274 ntBASIC3.07□□□□□ -1.92
HDAC4P56524 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HDAC4P56524 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.07□□□□□ -1.92
HDAC4P56524 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.07□□□□□ -1.92
HDAC4P56524 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.06□□□□□ -1.92
HDAC4P56524 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
HDAC4P56524 RNU6-778P-201ENST00000363269 103 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 Y_RNA.157-201ENST00000363638 102 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 SNORD56.5-201ENST00000364281 72 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 SNORD21-201ENST00000383953 95 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 Y_RNA.399-201ENST00000383955 105 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 RNU1-73P-201ENST00000383971 164 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 RNU6-45P-201ENST00000384471 107 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 RNU6-393P-201ENST00000384475 107 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HDAC4P56524 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.06□□□□□ -1.92
HDAC4P56524 RNU2-3P-201ENST00000410144 191 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 RNU6-373P-201ENST00000411247 98 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 SKA2P1-201ENST00000425592 390 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC098614.2-201ENST00000426040 255 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.06□□□□□ -1.92
HDAC4P56524 BRK1P2-201ENST00000442875 223 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.06□□□□□ -1.92
HDAC4P56524 RNU7-66P-201ENST00000459469 62 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 RNU6-1208P-201ENST00000459588 107 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AP000852.1-201ENST00000472460 573 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC096576.1-201ENST00000489014 359 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.06□□□□□ -1.92
HDAC4P56524 MTND3P25-201ENST00000509243 135 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.06□□□□□ -1.92
HDAC4P56524 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.06□□□□□ -1.92
HDAC4P56524 AC104136.1-201ENST00000512969 394 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 LRRC34P2-201ENST00000514850 553 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 RNU1-86P-201ENST00000516108 154 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 RNA5SP341-201ENST00000516261 117 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 RNU1-107P-201ENST00000516617 154 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC025755.1-201ENST00000521306 278 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AP002404.1-201ENST00000532005 451 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC005498.1-201ENST00000592125 465 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC012119.1-201ENST00000603184 222 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 BNIP3P10-201ENST00000605360 577 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 CTHRC1P1-201ENST00000605383 469 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 MIR7106-201ENST00000612419 65 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC107871.2-201ENST00000612894 502 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AL136221.1-201ENST00000621449 509 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC002064.3-201ENST00000623448 346 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 AC100810.6-201ENST00000638068 285 ntBASIC3.06□□□□□ -1.92
HDAC4P56524 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HDAC4P56524 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
HDAC4P56524 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.05□□□□□ -1.92
HDAC4P56524 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.05□□□□□ -1.92
HDAC4P56524 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.05□□□□□ -1.92
HDAC4P56524 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.05□□□□□ -1.92
HDAC4P56524 AL161431.1-201ENST00000618966 4205 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HDAC4P56524 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HDAC4P56524 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HDAC4P56524 RNA5SP432-201ENST00000362480 116 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 SNORA72.1-201ENST00000363485 129 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AL138885.1-201ENST00000405921 675 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AL162578.1-201ENST00000406202 378 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 NDUFS5P4-201ENST00000412983 318 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AL592148.1-201ENST00000413568 445 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 CYCSP33-201ENST00000414485 327 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.05□□□□□ -1.92
HDAC4P56524 HMGB1P9-201ENST00000429856 646 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 PRPS1P1-201ENST00000445305 876 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 MTATP6P7-201ENST00000453315 681 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.05□□□□□ -1.92
HDAC4P56524 AC087884.1-201ENST00000469738 328 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AC026801.1-201ENST00000497178 464 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AC008716.1-201ENST00000511084 513 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.05□□□□□ -1.92
HDAC4P56524 RNU6-572P-201ENST00000516724 80 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 SNORA31.19-201ENST00000517079 126 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.05□□□□□ -1.92
HDAC4P56524 RPL7P20-201ENST00000520308 745 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.05□□□□□ -1.92
HDAC4P56524 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.05□□□□□ -1.92
HDAC4P56524 MTCO3P13-201ENST00000577757 781 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AC020895.1-201ENST00000595362 272 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.05□□□□□ -1.92
HDAC4P56524 RPL12P50-201ENST00000603116 116 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AC006023.1-201ENST00000603944 259 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.05□□□□□ -1.92
HDAC4P56524 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 UCA1.1-201ENST00000620952 75 ntBASIC3.05□□□□□ -1.92
HDAC4P56524 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.05□□□□□ -1.92
HDAC4P56524 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HDAC4P56524 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.05□□□□□ -1.92
HDAC4P56524 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HDAC4P56524 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
HDAC4P56524 MIR412-201ENST00000362142 91 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 RNU6-82P-201ENST00000363970 107 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 RNU6-384P-201ENST00000364900 104 ntBASIC3.04□□□□□ -1.92
HDAC4P56524 RNU1-140P-201ENST00000365040 165 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms