Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
COL4A4P53420 MIR548P-201ENST00000408336 84 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 MIR1276-201ENST00000408707 83 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 NCOR1P3-201ENST00000420479 303 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.15□□□□□ -2.06
COL4A4P53420 AC133104.1-201ENST00000429100 218 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.15□□□□□ -2.06
COL4A4P53420 SNRPEP7-201ENST00000438350 220 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 MTND3P2-201ENST00000438452 342 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 RNU7-136P-201ENST00000458819 69 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 Y_RNA.631-201ENST00000459607 101 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.15□□□□□ -2.06
COL4A4P53420 AC015724.1-201ENST00000478577 156 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.15□□□□□ -2.06
COL4A4P53420 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC2.15□□□□□ -2.06
COL4A4P53420 RNU6-794P-201ENST00000517261 64 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AP005597.4-201ENST00000526762 229 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AP003072.2-201ENST00000527756 676 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.15□□□□□ -2.06
COL4A4P53420 AC093012.1-202ENST00000549403 582 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AC068446.3-201ENST00000555285 382 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.15□□□□□ -2.06
COL4A4P53420 AMZ2P1-203ENST00000565833 850 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 SNRPGP17-201ENST00000603780 214 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 CYP2C61P-201ENST00000604072 290 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 Z84480.1-201ENST00000605131 311 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AC019193.3-201ENST00000609144 554 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.15□□□□□ -2.06
COL4A4P53420 MIR7973-1-201ENST00000614683 76 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 RMST_2.1-201ENST00000617263 136 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 AC018926.3-201ENST00000618841 406 ntBASIC2.15□□□□□ -2.06
COL4A4P53420 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
COL4A4P53420 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL4A4P53420 Y_RNA.197-201ENST00000364004 102 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 Y_RNA.255-201ENST00000364581 97 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 Y_RNA.259-201ENST00000364619 101 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.15□□□□□ -2.07
COL4A4P53420 Y_RNA.474-201ENST00000384341 102 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 RNU6-1158P-201ENST00000391167 107 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.15□□□□□ -2.07
COL4A4P53420 BTF3P4-201ENST00000418852 495 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 RPL36AP53-201ENST00000432891 316 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.07
COL4A4P53420 BRK1P2-201ENST00000442875 223 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.15□□□□□ -2.07
COL4A4P53420 RPL23AP7-203ENST00000449021 469 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.15□□□□□ -2.07
COL4A4P53420 RPL12P25-201ENST00000455592 494 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 HNRNPDLP3-201ENST00000456745 380 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 AC130509.1-201ENST00000464158 433 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
COL4A4P53420 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.15□□□□□ -2.07
COL4A4P53420 MTND4LP22-201ENST00000508209 276 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 Y_RNA.682-201ENST00000516457 100 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.15□□□□□ -2.07
COL4A4P53420 OR5B19P-201ENST00000531766 928 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.15□□□□□ -2.07
COL4A4P53420 DNAJC19P9-201ENST00000555084 351 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.15□□□□□ -2.07
COL4A4P53420 AC123786.2-201ENST00000603459 275 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 AC011468.4-201ENST00000603942 409 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 AL080274.1-201ENST00000605565 220 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 RNU6-89P-201ENST00000606519 100 ntBASIC2.15□□□□□ -2.07
COL4A4P53420 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.14□□□□□ -2.07
COL4A4P53420 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC2.14□□□□□ -2.07
COL4A4P53420 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.14□□□□□ -2.07
COL4A4P53420 AL592437.2-201ENST00000421655 2434 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.14□□□□□ -2.07
COL4A4P53420 MIR369-201ENST00000362155 70 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 RNU4-1-201ENST00000363925 141 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 RNU6-115P-201ENST00000364310 107 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 RNU6-282P-201ENST00000365357 103 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 Y_RNA.579-201ENST00000390939 94 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 AC009310.1-201ENST00000414414 451 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 AC099336.2-201ENST00000422457 254 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 GTF2IP13-201ENST00000438487 386 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.14□□□□□ -2.07
COL4A4P53420 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.14□□□□□ -2.07
COL4A4P53420 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.14□□□□□ -2.07
COL4A4P53420 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.14□□□□□ -2.07
COL4A4P53420 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC2.14□□□□□ -2.07
COL4A4P53420 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
COL4A4P53420 AC090096.1-201ENST00000489168 390 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 RPL23AP63-201ENST00000498752 471 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 RNU6-1170P-201ENST00000515974 106 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 LY96-202ENST00000518893 430 ntTSL 3 BASIC2.14□□□□□ -2.07
COL4A4P53420 AC107934.1-201ENST00000522215 217 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.14□□□□□ -2.07
COL4A4P53420 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.14□□□□□ -2.07
COL4A4P53420 AC068714.1-201ENST00000559623 800 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 MIR4512-201ENST00000583257 77 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC2.14□□□□□ -2.07
COL4A4P53420 AC010525.2-201ENST00000590920 195 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 AL354950.2-201ENST00000617939 290 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.14□□□□□ -2.07
COL4A4P53420 AC090617.10-201ENST00000624308 134 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 AL133216.2-202ENST00000634512 349 ntBASIC2.14□□□□□ -2.07
COL4A4P53420 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
COL4A4P53420 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
COL4A4P53420 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms