Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
PTPN9P43378 CBX3P1-201ENST00000325243 554 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 Y_RNA.212-201ENST00000364177 102 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 RNU6-1303P-201ENST00000364841 107 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 Z98749.2-208ENST00000381646 500 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 SNORA9-201ENST00000384215 133 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 RNU1-101P-201ENST00000391171 127 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.04□□□□□ -1.92
PTPN9P43378 MIR887-201ENST00000401258 79 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AL356057.2-201ENST00000403318 432 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.04□□□□□ -1.92
PTPN9P43378 RN7SKP32-201ENST00000410167 303 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 RNA5SP344-201ENST00000411081 104 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AL139281.1-201ENST00000422120 335 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AC104332.2-201ENST00000429959 156 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 IFNA20P-201ENST00000436840 528 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 RPL21P2-201ENST00000440049 481 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 CYCSP32-201ENST00000440548 321 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.04□□□□□ -1.92
PTPN9P43378 AP004217.1-201ENST00000480579 346 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 HMGN1P12-201ENST00000499125 195 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AC083906.5-201ENST00000503722 328 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.04□□□□□ -1.92
PTPN9P43378 Y_RNA.702-201ENST00000516843 96 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 SNORA31.21-201ENST00000517180 77 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AC087854.1-201ENST00000519706 414 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.04□□□□□ -1.92
PTPN9P43378 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.04□□□□□ -1.92
PTPN9P43378 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.04□□□□□ -1.92
PTPN9P43378 AC005730.3-201ENST00000583067 366 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.04□□□□□ -1.92
PTPN9P43378 AP000787.2-201ENST00000604432 568 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 ATP1B3P1-201ENST00000605365 821 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 AC002044.1-201ENST00000606707 158 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PTPN9P43378 AL161629.2-201ENST00000615347 275 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 SCARNA4-202ENST00000625402 129 ntBASIC3.04□□□□□ -1.92
PTPN9P43378 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
PTPN9P43378 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
PTPN9P43378 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PTPN9P43378 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.03□□□□□ -1.92
PTPN9P43378 CDC27P3-201ENST00000635418 1910 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.03□□□□□ -1.92
PTPN9P43378 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.03□□□□□ -1.92
PTPN9P43378 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.03□□□□□ -1.92
PTPN9P43378 MIR518D-201ENST00000385014 87 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 MTND3P8-201ENST00000412909 339 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.03□□□□□ -1.92
PTPN9P43378 RPL35AP12-201ENST00000425362 338 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 TOMM20P4-201ENST00000427861 435 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 HMGN2P10-201ENST00000448085 265 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 AL031183.1-201ENST00000457667 207 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 RNU7-138P-201ENST00000459479 64 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 RNU6-864P-201ENST00000516256 108 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.03□□□□□ -1.92
PTPN9P43378 AC107953.1-201ENST00000522216 297 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.03□□□□□ -1.92
PTPN9P43378 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.03□□□□□ -1.92
PTPN9P43378 DNAJC8P1-201ENST00000554535 372 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN9P43378 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.03□□□□□ -1.92
PTPN9P43378 MIR5692C1-201ENST00000585309 91 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.03□□□□□ -1.92
PTPN9P43378 AC025253.1-201ENST00000613623 543 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.03□□□□□ -1.92
PTPN9P43378 Z69720.2-201ENST00000624755 279 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 AL353743.1-202ENST00000431724 1695 ntBASIC3.03□□□□□ -1.92
PTPN9P43378 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PTPN9P43378 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PTPN9P43378 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.02□□□□□ -1.93
PTPN9P43378 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.02□□□□□ -1.93
PTPN9P43378 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.02□□□□□ -1.93
PTPN9P43378 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.02□□□□□ -1.93
PTPN9P43378 RNU1-35P-201ENST00000362782 153 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 RNU6-254P-201ENST00000363377 107 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 RNU6-799P-201ENST00000363567 107 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 RNU1-140P-201ENST00000365040 165 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 RNU6-128P-201ENST00000383976 107 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 RNU6-1013P-201ENST00000384180 107 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 MIR10A-201ENST00000385043 110 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 SNORA48.5-201ENST00000391143 135 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AL096701.2-201ENST00000416920 238 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.02□□□□□ -1.93
PTPN9P43378 AL365496.1-201ENST00000426885 215 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 BTF3P15-201ENST00000455606 336 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 RNU6-329P-201ENST00000459618 107 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AC087884.1-201ENST00000469738 328 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AC117503.1-201ENST00000472241 394 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AC113155.1-201ENST00000511141 769 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AC022634.1-201ENST00000520765 532 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AP000763.2-201ENST00000540641 163 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.02□□□□□ -1.93
PTPN9P43378 HMGN2P15-201ENST00000585707 270 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 CTHRC1P1-201ENST00000605383 469 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AC090115.4-201ENST00000609970 188 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AL355073.2-201ENST00000612106 557 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AL162274.2-201ENST00000614406 332 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 ATP5A1P2-202ENST00000616464 443 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AC091953.5-201ENST00000622919 233 ntBASIC3.02□□□□□ -1.93
PTPN9P43378 AC008669.1-201ENST00000565823 2178 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms