Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RPL26P6-201ENST00000440913 438 ntBASIC0.43□□□□□ -2.34
CUX1P39880 RPS27P22-201ENST00000478056 241 ntBASIC0.43□□□□□ -2.34
CUX1P39880 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.43□□□□□ -2.34
CUX1P39880 AC124947.2-202ENST00000552735 133 ntBASIC0.43□□□□□ -2.34
CUX1P39880 AC005261.5-201ENST00000596280 355 ntBASIC0.43□□□□□ -2.34
CUX1P39880 AC004775.1-201ENST00000607389 753 ntBASIC0.43□□□□□ -2.34
CUX1P39880 UBE2Q2P6-201ENST00000612666 153 ntBASIC0.43□□□□□ -2.34
CUX1P39880 AC099654.5-201ENST00000636479 350 ntBASIC0.43□□□□□ -2.34
CUX1P39880 SNORA4.1-201ENST00000364263 144 ntBASIC0.42□□□□□ -2.34
CUX1P39880 AC010385.1-201ENST00000412374 256 ntBASIC0.42□□□□□ -2.34
CUX1P39880 MTND5P14-201ENST00000441481 1267 ntBASIC0.42□□□□□ -2.34
CUX1P39880 AC114982.1-201ENST00000469402 321 ntBASIC0.42□□□□□ -2.34
CUX1P39880 AC018868.1-201ENST00000491307 315 ntBASIC0.42□□□□□ -2.34
CUX1P39880 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.42□□□□□ -2.34
CUX1P39880 SMURF2P1-201ENST00000514992 481 ntBASIC0.42□□□□□ -2.34
CUX1P39880 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.42□□□□□ -2.34
CUX1P39880 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.42□□□□□ -2.34
CUX1P39880 AL159152.1-201ENST00000635019 2587 ntBASIC0.41□□□□□ -2.34
CUX1P39880 RNU6-140P-201ENST00000384566 108 ntBASIC0.41□□□□□ -2.34
CUX1P39880 MIR888-201ENST00000401186 77 ntBASIC0.41□□□□□ -2.34
CUX1P39880 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.41□□□□□ -2.34
CUX1P39880 RPL22P13-201ENST00000493291 347 ntBASIC0.41□□□□□ -2.34
CUX1P39880 AC025465.3-201ENST00000510570 311 ntBASIC0.41□□□□□ -2.34
CUX1P39880 AC124293.1-201ENST00000530034 493 ntBASIC0.41□□□□□ -2.34
CUX1P39880 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.41□□□□□ -2.34
CUX1P39880 AC009268.1-201ENST00000561352 1203 ntBASIC0.41□□□□□ -2.34
CUX1P39880 AL022067.1-201ENST00000602426 454 ntBASIC0.41□□□□□ -2.34
CUX1P39880 AL021879.1-201ENST00000611756 288 ntBASIC0.41□□□□□ -2.34
CUX1P39880 MIR8063-201ENST00000621930 81 ntBASIC0.41□□□□□ -2.34
CUX1P39880 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.4□□□□□ -2.34
CUX1P39880 AC138393.1-203ENST00000327086 343 ntBASIC0.4□□□□□ -2.35
CUX1P39880 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.4□□□□□ -2.35
CUX1P39880 MIR649-201ENST00000384843 97 ntBASIC0.4□□□□□ -2.35
CUX1P39880 RNU2-47P-201ENST00000410649 186 ntBASIC0.4□□□□□ -2.35
CUX1P39880 ZNF863P-201ENST00000426746 417 ntBASIC0.4□□□□□ -2.35
CUX1P39880 HMGN3P1-201ENST00000453847 193 ntBASIC0.4□□□□□ -2.35
CUX1P39880 SNORA25.11-201ENST00000515935 105 ntBASIC0.4□□□□□ -2.35
CUX1P39880 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.4□□□□□ -2.35
CUX1P39880 AC012414.6-201ENST00000568241 401 ntBASIC0.4□□□□□ -2.35
CUX1P39880 ADAM3B-201ENST00000569937 840 ntBASIC0.4□□□□□ -2.35
CUX1P39880 AL022345.1-201ENST00000607292 135 ntBASIC0.4□□□□□ -2.35
CUX1P39880 Pinc.1-201ENST00000616452 154 ntBASIC0.4□□□□□ -2.35
CUX1P39880 RNA5SP368-201ENST00000364298 116 ntBASIC0.39□□□□□ -2.35
CUX1P39880 RNU6-444P-201ENST00000383988 108 ntBASIC0.39□□□□□ -2.35
CUX1P39880 USP9YP19-201ENST00000412165 485 ntBASIC0.39□□□□□ -2.35
CUX1P39880 USP9YP13-201ENST00000417797 480 ntBASIC0.39□□□□□ -2.35
CUX1P39880 AL512637.2-201ENST00000431287 1256 ntBASIC0.39□□□□□ -2.35
CUX1P39880 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC0.39□□□□□ -2.35
CUX1P39880 MTND4P6-201ENST00000438297 472 ntBASIC0.39□□□□□ -2.35
CUX1P39880 Z82210.1-201ENST00000440037 231 ntBASIC0.39□□□□□ -2.35
CUX1P39880 RAB11AP1-201ENST00000442978 646 ntBASIC0.39□□□□□ -2.35
CUX1P39880 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
CUX1P39880 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.39□□□□□ -2.35
CUX1P39880 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.39□□□□□ -2.35
CUX1P39880 SNORA77B-201ENST00000578179 125 ntBASIC0.39□□□□□ -2.35
CUX1P39880 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.39□□□□□ -2.35
CUX1P39880 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.39□□□□□ -2.35
CUX1P39880 AC091965.5-201ENST00000624785 342 ntBASIC0.39□□□□□ -2.35
CUX1P39880 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
CUX1P39880 RNA5SP100-201ENST00000410903 110 ntBASIC0.38□□□□□ -2.35
CUX1P39880 RNA5SP59-201ENST00000410922 110 ntBASIC0.38□□□□□ -2.35
CUX1P39880 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC0.38□□□□□ -2.35
CUX1P39880 NCOR1P3-201ENST00000420479 303 ntBASIC0.38□□□□□ -2.35
CUX1P39880 BEND7P1-201ENST00000422058 457 ntBASIC0.38□□□□□ -2.35
CUX1P39880 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC0.38□□□□□ -2.35
CUX1P39880 MTND2P24-201ENST00000453434 806 ntBASIC0.38□□□□□ -2.35
CUX1P39880 TRBVA-201ENST00000498804 316 ntBASIC0.38□□□□□ -2.35
CUX1P39880 AC113420.1-201ENST00000507903 571 ntBASIC0.38□□□□□ -2.35
CUX1P39880 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.38□□□□□ -2.35
CUX1P39880 NACAP3-201ENST00000552100 481 ntBASIC0.38□□□□□ -2.35
CUX1P39880 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC0.38□□□□□ -2.35
CUX1P39880 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.38□□□□□ -2.35
CUX1P39880 BNIP3P26-201ENST00000600827 554 ntBASIC0.38□□□□□ -2.35
CUX1P39880 VN1R82P-201ENST00000601481 356 ntBASIC0.38□□□□□ -2.35
CUX1P39880 AC069304.2-201ENST00000605154 435 ntBASIC0.38□□□□□ -2.35
CUX1P39880 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.38□□□□□ -2.35
CUX1P39880 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.38□□□□□ -2.35
CUX1P39880 AC134026.1-201ENST00000623249 2239 ntBASIC0.38□□□□□ -2.35
CUX1P39880 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
CUX1P39880 Y_RNA.324-201ENST00000365165 102 ntBASIC0.38□□□□□ -2.35
CUX1P39880 MIR135A2-201ENST00000384854 100 ntBASIC0.38□□□□□ -2.35
CUX1P39880 MIR597-201ENST00000384968 97 ntBASIC0.38□□□□□ -2.35
CUX1P39880 MIR1267-201ENST00000408723 78 ntBASIC0.38□□□□□ -2.35
CUX1P39880 RNU2-43P-201ENST00000410306 190 ntBASIC0.38□□□□□ -2.35
CUX1P39880 AL049874.1-201ENST00000489560 388 ntBASIC0.38□□□□□ -2.35
CUX1P39880 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.38□□□□□ -2.35
CUX1P39880 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.38□□□□□ -2.35
CUX1P39880 CYP3A52P-201ENST00000563326 91 ntBASIC0.38□□□□□ -2.35
CUX1P39880 BNIP3P23-201ENST00000599655 511 ntBASIC0.38□□□□□ -2.35
CUX1P39880 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.38□□□□□ -2.35
CUX1P39880 AL138726.1-201ENST00000614873 333 ntBASIC0.38□□□□□ -2.35
CUX1P39880 Z75746.1-201ENST00000440243 2080 ntBASIC0.38□□□□□ -2.35
CUX1P39880 MTND5P31-201ENST00000419366 1374 ntBASIC0.37□□□□□ -2.35
CUX1P39880 Y_RNA.142-201ENST00000363491 102 ntBASIC0.37□□□□□ -2.35
CUX1P39880 MIR608-201ENST00000384820 100 ntBASIC0.37□□□□□ -2.35
CUX1P39880 AL591034.2-201ENST00000402839 359 ntBASIC0.37□□□□□ -2.35
CUX1P39880 AC078974.1-201ENST00000411597 223 ntBASIC0.37□□□□□ -2.35
CUX1P39880 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.37□□□□□ -2.35
CUX1P39880 RPS3AP37-201ENST00000419176 745 ntBASIC0.37□□□□□ -2.35
CUX1P39880 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms