Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SNORA14A-201ENST00000364773 135 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RNU6-128P-201ENST00000383976 107 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 SNORD15B-201ENST00000384714 146 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RN7SKP158-201ENST00000410453 326 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 Y_RNA.623-201ENST00000411128 95 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 AL359672.1-201ENST00000442302 409 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RPS12P18-201ENST00000442381 270 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 NDUFB1P2-201ENST00000449477 176 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 AC107399.1-201ENST00000451226 265 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RPS27P29-201ENST00000463110 252 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.63□□□□□ -1.83
SMARCA1P28370 AC092436.3-201ENST00000511788 257 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RN7SKP24-201ENST00000515888 284 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RNA5SP217-201ENST00000515959 91 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RNU6-1153P-201ENST00000516760 105 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.63□□□□□ -1.83
SMARCA1P28370 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.63□□□□□ -1.83
SMARCA1P28370 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SMARCA1P28370 AP000867.2-201ENST00000532468 320 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.63□□□□□ -1.83
SMARCA1P28370 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.63□□□□□ -1.83
SMARCA1P28370 AC007151.1-201ENST00000572774 483 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.63□□□□□ -1.83
SMARCA1P28370 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.63□□□□□ -1.83
SMARCA1P28370 AC044792.1-201ENST00000593294 196 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 AL133393.1-201ENST00000603277 287 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 RNU6-85P-201ENST00000605989 107 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 AL591516.1-201ENST00000611326 274 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
SMARCA1P28370 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.63□□□□□ -1.83
SMARCA1P28370 MTND5P27-201ENST00000428871 1720 ntBASIC3.63□□□□□ -1.83
SMARCA1P28370 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
SMARCA1P28370 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
SMARCA1P28370 AL035425.3-201ENST00000564206 4996 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.62□□□□□ -1.83
SMARCA1P28370 MAPK10-322ENST00000641485 4530 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SMARCA1P28370 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SMARCA1P28370 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SMARCA1P28370 RNU6-166P-201ENST00000384371 107 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 RNA5SP252-201ENST00000391131 119 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 AL360182.1-201ENST00000397433 468 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 AC245291.1-201ENST00000419501 328 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.62□□□□□ -1.83
SMARCA1P28370 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.62□□□□□ -1.83
SMARCA1P28370 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.62□□□□□ -1.83
SMARCA1P28370 BRK1P2-201ENST00000442875 223 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.62□□□□□ -1.83
SMARCA1P28370 RNU7-138P-201ENST00000459479 64 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 RPS27P27-201ENST00000498779 255 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.62□□□□□ -1.83
SMARCA1P28370 HMGN1P13-201ENST00000505795 138 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 RNU6-572P-201ENST00000516724 80 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 UBL5P2-201ENST00000583788 219 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 AC123912.5-201ENST00000605470 343 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 U2.21-201ENST00000637295 81 ntBASIC3.62□□□□□ -1.83
SMARCA1P28370 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
SMARCA1P28370 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.62□□□□□ -1.83
SMARCA1P28370 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.62□□□□□ -1.83
SMARCA1P28370 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SMARCA1P28370 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SMARCA1P28370 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.61□□□□□ -1.83
SMARCA1P28370 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
SMARCA1P28370 Y_RNA.394-201ENST00000383942 103 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 Y_RNA.460-201ENST00000384255 102 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 RNU6-95P-201ENST00000384697 107 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 RN7SKP220-201ENST00000410611 288 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 RPL37P10-201ENST00000412884 288 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 PGBD4P6-201ENST00000421501 610 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 Y_RNA.635-201ENST00000459041 101 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 SNORD19B-201ENST00000459623 84 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 AC006445.1-201ENST00000491925 405 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 AC079140.5-201ENST00000507882 310 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.61□□□□□ -1.83
SMARCA1P28370 RNU6-559P-201ENST00000516151 98 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 SNORA64.4-201ENST00000516632 81 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 Y_RNA.701-201ENST00000516812 110 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 RNU6-703P-201ENST00000516946 107 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 RNA5SP380-201ENST00000517190 98 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 AC069113.1-201ENST00000517763 267 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.61□□□□□ -1.83
SMARCA1P28370 AC026371.1-201ENST00000551867 419 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.61□□□□□ -1.83
SMARCA1P28370 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.61□□□□□ -1.83
SMARCA1P28370 MIR3200-201ENST00000580767 85 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 AC100830.2-201ENST00000581636 240 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.61□□□□□ -1.83
SMARCA1P28370 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 MTND4LP32-201ENST00000636111 270 ntBASIC3.61□□□□□ -1.83
SMARCA1P28370 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
SMARCA1P28370 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SMARCA1P28370 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AC092435.3-201ENST00000565538 3654 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SMARCA1P28370 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.6□□□□□ -1.83
SMARCA1P28370 AC010680.1-201ENST00000590024 3590 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 GABRG2-229ENST00000641017 3628 ntBASIC3.6□□□□□ -1.83
SMARCA1P28370 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 148.5 ms