Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MTCYBP33-201ENST00000575007 1130 ntBASIC1.95□□□□□ -2.1
CLDN9O95484 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CLDN9O95484 HMGN1P30-201ENST00000589286 268 ntBASIC1.95□□□□□ -2.1
CLDN9O95484 AC112191.3-201ENST00000604371 277 ntBASIC1.95□□□□□ -2.1
CLDN9O95484 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.95□□□□□ -2.1
CLDN9O95484 AC138749.5-201ENST00000611461 208 ntBASIC1.95□□□□□ -2.1
CLDN9O95484 AC009090.3-201ENST00000616553 565 ntBASIC1.95□□□□□ -2.1
CLDN9O95484 AC116165.2-201ENST00000616705 206 ntBASIC1.95□□□□□ -2.1
CLDN9O95484 AL391262.2-201ENST00000622466 494 ntBASIC1.95□□□□□ -2.1
CLDN9O95484 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.95□□□□□ -2.1
CLDN9O95484 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
CLDN9O95484 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
CLDN9O95484 SNORA64-201ENST00000384674 134 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 MIR10A-201ENST00000385043 110 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 MIR1287-201ENST00000408492 90 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 RNA5SP338-201ENST00000410495 85 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 HMGB3P2-201ENST00000411913 584 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC010099.3-201ENST00000423896 409 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AL356583.2-201ENST00000426536 280 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AL627311.1-201ENST00000431514 115 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC1.94□□□□□ -2.1
CLDN9O95484 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CLDN9O95484 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.94□□□□□ -2.1
CLDN9O95484 HMGB1P30-201ENST00000492455 606 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC092436.1-201ENST00000506450 503 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.94□□□□□ -2.1
CLDN9O95484 SNORA31.25-201ENST00000517242 134 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.94□□□□□ -2.1
CLDN9O95484 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC1.94□□□□□ -2.1
CLDN9O95484 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.94□□□□□ -2.1
CLDN9O95484 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.94□□□□□ -2.1
CLDN9O95484 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.94□□□□□ -2.1
CLDN9O95484 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.94□□□□□ -2.1
CLDN9O95484 MIR4648-201ENST00000580107 72 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.94□□□□□ -2.1
CLDN9O95484 MIR548AC-201ENST00000585049 88 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC073410.2-201ENST00000603240 332 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 NDUFA8P1-201ENST00000605525 367 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.94□□□□□ -2.1
CLDN9O95484 AC022202.1-201ENST00000613515 211 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 Y_RNA.783-201ENST00000613546 102 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC008121.3-201ENST00000618726 433 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC009878.1-201ENST00000621819 340 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AL031601.2-202ENST00000622650 282 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 AC002543.1-201ENST00000299783 1954 ntBASIC1.94□□□□□ -2.1
CLDN9O95484 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CLDN9O95484 AC103710.2-202ENST00000641454 2853 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 SNORD14B-201ENST00000364533 90 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 RNU6-72P-201ENST00000384285 79 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 RNU1-57P-201ENST00000384491 166 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 AL591034.2-201ENST00000402839 359 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.93□□□□□ -2.1
CLDN9O95484 UBE2V1P10-201ENST00000414685 269 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.93□□□□□ -2.1
CLDN9O95484 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.93□□□□□ -2.1
CLDN9O95484 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.93□□□□□ -2.1
CLDN9O95484 AC096638.1-201ENST00000444678 216 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.93□□□□□ -2.1
CLDN9O95484 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.93□□□□□ -2.1
CLDN9O95484 AC055731.1-201ENST00000474387 401 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 RPL21P99-201ENST00000480369 423 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 RPL9P6-201ENST00000492764 598 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 SNORA48.11-201ENST00000517015 89 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 AP004607.1-201ENST00000524456 203 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 AC007229.1-201ENST00000590455 412 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 RPL30P11-203ENST00000598995 310 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 AL139286.2-201ENST00000606838 396 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 DUXAP9-208ENST00000622815 614 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 MIR3529-201ENST00000637713 78 ntBASIC1.93□□□□□ -2.1
CLDN9O95484 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CLDN9O95484 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CLDN9O95484 RNU6-1179P-201ENST00000384667 107 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 MIR95-201ENST00000385072 81 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 RNU2-39P-201ENST00000410604 198 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC1.92□□□□□ -2.1
CLDN9O95484 DPH3P2-201ENST00000422618 250 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 AC008267.5-201ENST00000424928 265 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.92□□□□□ -2.1
CLDN9O95484 UBE2D3P4-201ENST00000441973 436 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 AC107032.1-201ENST00000485945 480 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 MTAPP1-201ENST00000489154 819 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.92□□□□□ -2.1
CLDN9O95484 AC117522.1-201ENST00000509821 380 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 Y_RNA.672-201ENST00000516289 104 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.92□□□□□ -2.1
CLDN9O95484 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.92□□□□□ -2.1
CLDN9O95484 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.92□□□□□ -2.1
CLDN9O95484 MIR5089-201ENST00000580047 84 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 MIR4448-201ENST00000584360 86 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 AC021646.1-201ENST00000605469 484 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 U6.42-201ENST00000618440 107 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 AC131159.1-201ENST00000621854 213 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 AC099654.13-201ENST00000639774 207 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 KPNA2P1-201ENST00000458289 1591 ntBASIC1.92□□□□□ -2.1
CLDN9O95484 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.92□□□□□ -2.1
CLDN9O95484 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
CLDN9O95484 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CLDN9O95484 RNU6-942P-201ENST00000363002 107 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 RNU1-23P-201ENST00000363361 144 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 SNORA25B-201ENST00000365507 128 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms