Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PCDHGA3Q9Y5H0 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PCDHGA3Q9Y5H0 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
PCDHGA3Q9Y5H0 MTCO1P12-201ENST00000414273 1543 ntBASIC3.59□□□□□ -1.84
PCDHGA3Q9Y5H0 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
PCDHGA3Q9Y5H0 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
PCDHGA3Q9Y5H0 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 Y_RNA.259-201ENST00000364619 101 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 SNORA14A-201ENST00000364773 135 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 RNU1-100P-201ENST00000365255 165 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 RNU6-1245P-201ENST00000411130 106 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 Z99755.1-201ENST00000414048 380 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 AC005300.1-201ENST00000428401 373 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 AL591043.1-201ENST00000432461 424 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 U3.44-201ENST00000458938 192 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 RNU6-307P-201ENST00000516743 106 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 Y_RNA.708-201ENST00000516950 96 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 AC093331.1-201ENST00000521474 169 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 AC006199.1-201ENST00000548728 219 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 AL121917.1-203ENST00000605534 577 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 BRDTP1-201ENST00000605735 677 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 RMST_8.1-201ENST00000610287 165 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 AC098657.3-201ENST00000620434 263 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 MIR3529-201ENST00000637713 78 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 AC008669.1-201ENST00000565823 2178 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 HAUS6P2-201ENST00000433254 2404 ntBASIC3.58□□□□□ -1.84
PCDHGA3Q9Y5H0 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RPL9P7-201ENST00000330965 580 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 Y_RNA.58-201ENST00000362807 102 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RNU6-527P-201ENST00000363425 104 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 Y_RNA.154-201ENST00000363624 102 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RNU6-694P-201ENST00000364071 147 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RNY3P1-201ENST00000365085 102 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RNY3-201ENST00000365484 102 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 Y_RNA.490-201ENST00000384413 102 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RNU6-790P-201ENST00000384479 105 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RPS29P13-201ENST00000402041 169 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 HLFP1-201ENST00000402375 499 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RNU6-370P-201ENST00000411008 104 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 CYCSP4-201ENST00000429682 331 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AC097713.2-201ENST00000430199 356 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AL513043.1-201ENST00000439124 535 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 MTND5P1-201ENST00000445440 1375 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RPL21P23-201ENST00000446654 460 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AL031183.1-201ENST00000457667 207 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 SNORD5.1-201ENST00000458800 75 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RPL9P9-202ENST00000466501 579 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AC018437.1-201ENST00000492214 406 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RPL23AP49-201ENST00000492925 468 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 MTCYBP40-201ENST00000509390 1135 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AC074250.1-201ENST00000511117 192 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AC005476.1-201ENST00000554427 397 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AL121821.2-201ENST00000556081 394 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AC025281.1-201ENST00000567026 265 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AC009314.1-201ENST00000603871 304 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 CYP2C61P-201ENST00000604072 290 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 SNORA62.6-201ENST00000606322 83 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 RNVU1-4-201ENST00000612985 164 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AL442067.2-201ENST00000614033 363 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 AL160413.1-201ENST00000622780 310 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 CEP170P1-201ENST00000502249 4587 ntBASIC3.57□□□□□ -1.84
PCDHGA3Q9Y5H0 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 MTND4P23-201ENST00000447723 1363 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 RNU6-942P-201ENST00000363002 107 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 MIR491-201ENST00000384877 84 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 MTHFD2P2-201ENST00000407725 247 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 AL161651.1-201ENST00000440882 223 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 Y_RNA.653-201ENST00000459091 95 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 ACA59.1-201ENST00000515966 143 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 RNU6-1170P-201ENST00000515974 106 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 RN7SKP83-201ENST00000516512 178 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 Y_RNA.718-201ENST00000517110 102 ntBASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.56□□□□□ -1.84
PCDHGA3Q9Y5H0 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms