Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 U2.10-201ENST00000620268 191 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AC087385.3-201ENST00000620477 187 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AC068870.2-201ENST00000620635 389 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 snoU18.1-201ENST00000629629 71 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 NOL8P1-201ENST00000508336 3529 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 AL133243.3-201ENST00000617415 3004 ntBASIC4.18□□□□□ -1.74
HIF3AQ9Y2N7 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AL353743.1-202ENST00000431724 1695 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 RNU4-80P-201ENST00000363200 141 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-151P-201ENST00000364158 107 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.230-201ENST00000364348 109 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-281P-201ENST00000384212 103 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 MIR329-1-201ENST00000385028 80 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 MIR195-201ENST00000385194 87 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 MIR325-201ENST00000385260 98 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AL645927.1-201ENST00000396783 406 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 RN7SKP100-201ENST00000411258 284 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 BX510359.2-201ENST00000417920 305 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 RPL12P3-201ENST00000440080 396 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 RN7SL329P-201ENST00000467740 299 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AC083982.1-201ENST00000485679 344 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 ZNF192P1-203ENST00000565888 810 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AC091178.1-203ENST00000584586 279 ntBASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.17□□□□□ -1.74
HIF3AQ9Y2N7 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 FTLP6-201ENST00000355274 422 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-942P-201ENST00000363002 107 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RNU1-20P-201ENST00000363314 162 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-215P-201ENST00000365169 102 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.412-201ENST00000384001 104 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 MIR518D-201ENST00000385014 87 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-1197P-201ENST00000391183 107 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 Z98745.1-201ENST00000402553 494 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-1245P-201ENST00000411130 106 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC138623.1-201ENST00000418060 216 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RPL21P66-201ENST00000426566 466 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC068287.1-201ENST00000430283 295 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC016831.4-201ENST00000438302 307 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC243964.1-201ENST00000441814 261 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RN7SL817P-201ENST00000480777 288 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RN7SL808P-201ENST00000496066 299 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC023141.12-201ENST00000512399 199 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-966P-201ENST00000516479 104 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RNU1-103P-201ENST00000516502 125 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC090281.1-201ENST00000523019 276 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC055872.1-201ENST00000570978 278 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 MIR5692C2-201ENST00000577959 77 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 MIR4700-201ENST00000578311 74 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 MIR3667-201ENST00000581025 74 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 FTX_3.1-201ENST00000610451 147 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AL357075.2-201ENST00000614906 189 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 AC112200.1-201ENST00000625015 234 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 MAPK10-263ENST00000641052 4307 ntBASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
HIF3AQ9Y2N7 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
HIF3AQ9Y2N7 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.15□□□□□ -1.74
HIF3AQ9Y2N7 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
HIF3AQ9Y2N7 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 RNA5SP191-201ENST00000362585 102 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 RNU1-140P-201ENST00000365040 165 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 Y_RNA.353-201ENST00000365440 108 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 U8.10-201ENST00000384260 133 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AL645733.1-201ENST00000402250 217 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 RN7SKP177-201ENST00000410567 355 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 AL035461.1-201ENST00000421490 332 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 BTF3P11-201ENST00000426582 477 ntBASIC4.15□□□□□ -1.75
HIF3AQ9Y2N7 RPS15AP5-201ENST00000436276 388 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms