Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AC010378.1-201ENST00000619270 362 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 U2.21-201ENST00000637295 81 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 ZNF826P-207ENST00000622273 1910 ntBASIC3.68□□□□□ -1.82
LIMCH1Q9UPQ0 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 Y_RNA.58-201ENST00000362807 102 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 Y_RNA.154-201ENST00000363624 102 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 RNY3P1-201ENST00000365085 102 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 RNY3-201ENST00000365484 102 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 Y_RNA.490-201ENST00000384413 102 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 MIR10A-201ENST00000385043 110 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-1106P-201ENST00000390845 107 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 NDUFS5P4-201ENST00000412983 318 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AC130509.1-201ENST00000464158 433 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AC110794.1-201ENST00000505816 425 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AC006445.2-201ENST00000510061 472 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 RNU1-103P-201ENST00000516502 125 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 MIR3158-1-201ENST00000583596 81 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AC044792.1-201ENST00000593294 196 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AL356055.1-201ENST00000602528 446 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AL138880.2-201ENST00000616214 239 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 AL136164.4-201ENST00000625013 2135 ntBASIC3.67□□□□□ -1.82
LIMCH1Q9UPQ0 MTND5P7-201ENST00000413558 1798 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 AC138393.1-203ENST00000327086 343 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 RNA5SP295-201ENST00000362655 121 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-778P-201ENST00000363269 103 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 Y_RNA.315-201ENST00000365117 102 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 RNU6-1329P-201ENST00000365664 107 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 RNU1-73P-201ENST00000383971 164 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 MIR670-201ENST00000390142 98 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 AL356057.2-201ENST00000403318 432 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 Z75741.1-201ENST00000446793 314 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 SNORD19B-201ENST00000459623 84 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 MTND4P17-201ENST00000470444 350 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 RPL30P14-201ENST00000482744 348 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 PHBP14-201ENST00000512887 367 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 RN7SKP43-201ENST00000516173 320 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 NACAP3-201ENST00000552100 481 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 MIR4429-201ENST00000580105 73 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 AC135507.2-201ENST00000612443 309 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 AC126177.8-201ENST00000618339 1015 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 AL160413.1-201ENST00000622780 310 ntBASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
LIMCH1Q9UPQ0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
LIMCH1Q9UPQ0 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.65□□□□□ -1.82
LIMCH1Q9UPQ0 MTND5P27-201ENST00000428871 1720 ntBASIC3.65□□□□□ -1.82
LIMCH1Q9UPQ0 SNORA7.4-201ENST00000384249 137 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 RPL5P18-201ENST00000406671 891 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AL353729.1-201ENST00000425044 720 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 RPL7P37-201ENST00000425095 738 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 RN7SL20P-201ENST00000488827 297 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AC092436.3-201ENST00000511788 257 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AC010265.1-201ENST00000513509 211 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 SNORA67.7-201ENST00000516664 135 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 RNU1-54P-201ENST00000517181 120 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AP005597.4-201ENST00000526762 229 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 LINC00933-203ENST00000559812 219 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 FRG2DP-202ENST00000566967 323 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 AC012468.1-201ENST00000604888 430 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 Z69720.2-201ENST00000624755 279 ntBASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LIMCH1Q9UPQ0 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6-884P-201ENST00000363889 107 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 MTCYBP4-201ENST00000401524 249 ntBASIC3.64□□□□□ -1.83
LIMCH1Q9UPQ0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms