Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AC125238.1-201ENST00000448842 249 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 AL133162.1-201ENST00000463228 453 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 SNORA43.2-201ENST00000516652 128 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 GNRHR2P1-201ENST00000555315 631 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 SUB1P3-201ENST00000564581 315 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 VN1R107P-201ENST00000601784 209 ntBASIC4.36□□□□□ -1.71
DDX41Q9UJV9 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
DDX41Q9UJV9 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 RNA5SP119-201ENST00000362715 117 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 RNU1-115P-201ENST00000365329 160 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 SNORA5A-201ENST00000384111 134 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 MIR199A2-201ENST00000385289 110 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 RPS29P13-201ENST00000402041 169 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 RNU6-1245P-201ENST00000411130 106 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC243428.1-201ENST00000421099 264 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC098831.1-201ENST00000440661 216 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 RPL21P23-201ENST00000446654 460 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 HMGN2P13-201ENST00000476476 274 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC015911.1-201ENST00000495111 156 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 RPS27AP10-201ENST00000496103 208 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC026403.1-201ENST00000518938 295 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 HSPE1P7-201ENST00000604681 321 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC005046.1-201ENST00000608515 625 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 MIR6134-201ENST00000617606 109 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AC066616.2-201ENST00000559334 1481 ntBASIC4.35□□□□□ -1.71
DDX41Q9UJV9 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
DDX41Q9UJV9 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.34□□□□□ -1.71
DDX41Q9UJV9 UBE3AP2-201ENST00000429033 2259 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AC006504.1-201ENST00000562493 3666 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 RNU6-227P-201ENST00000362865 103 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 Y_RNA.158-201ENST00000363651 101 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 RNU6-270P-201ENST00000364131 105 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 SNORD46.1-201ENST00000364139 104 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 MIR518D-201ENST00000385014 87 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 MRPL42P3-201ENST00000401492 326 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AC093578.1-201ENST00000415219 368 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AC091286.1-201ENST00000431233 461 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 SNORA71B-202ENST00000439232 272 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AC022447.4-201ENST00000504053 364 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AC010653.1-201ENST00000571108 881 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 MTND4LP5-201ENST00000605152 292 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.34□□□□□ -1.71
DDX41Q9UJV9 RMST_8.1-201ENST00000610287 165 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AC091925.1-201ENST00000623204 462 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AL034408.1-202ENST00000636088 415 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 AC010733.2-201ENST00000589496 5702 ntBASIC4.34□□□□□ -1.71
DDX41Q9UJV9 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
DDX41Q9UJV9 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.34□□□□□ -1.72
DDX41Q9UJV9 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
DDX41Q9UJV9 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 MTND5P9-201ENST00000503854 1755 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 MTND4P1-201ENST00000457501 1466 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 RNY1P16-201ENST00000363063 111 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 RNU6-336P-201ENST00000364891 107 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 RNU6-1280P-201ENST00000365211 107 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 Y_RNA.333-201ENST00000365274 102 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 RNY1P14-201ENST00000384426 108 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 Y_RNA.577-201ENST00000384794 101 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 AC017083.1-201ENST00000428093 483 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 MTND3P9-201ENST00000429526 346 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC4.33□□□□□ -1.72
DDX41Q9UJV9 AL136097.1-201ENST00000456945 913 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 RPL23AP62-201ENST00000463396 453 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 RPL23AP14-201ENST00000468281 468 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 FO393415.2-201ENST00000480085 343 ntBASIC4.33□□□□□ -1.72
DDX41Q9UJV9 AC026784.1-201ENST00000507986 352 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 167.5 ms