Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MIR325-201ENST00000385260 98 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 RNA5SP424-201ENST00000390988 115 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 RPS29P13-201ENST00000402041 169 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 RNU2-23P-201ENST00000410545 195 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 RNA5SP31-201ENST00000411144 127 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AC004975.1-201ENST00000428733 208 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AL117339.2-201ENST00000430475 180 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 TPT1P12-201ENST00000448968 492 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 RN7SL385P-201ENST00000468873 276 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 RNU6-764P-201ENST00000516396 105 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 RNU1-103P-201ENST00000516502 125 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 CASP1P1-201ENST00000526345 212 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AP000889.1-201ENST00000530968 660 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AC005476.1-201ENST00000554427 397 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AL117187.1-201ENST00000555482 181 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AC024153.1-201ENST00000603103 365 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AC016727.2-201ENST00000603988 621 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AC005046.1-201ENST00000608515 625 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 CEP170P1-201ENST00000502249 4587 ntBASIC3.35□□□□□ -1.87
VSX1Q9NZR4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
VSX1Q9NZR4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC007256.1-201ENST00000392253 2765 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 RNU6-778P-201ENST00000363269 103 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 RNA5SP515-201ENST00000364570 118 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 RNU6-1317P-201ENST00000364582 104 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 RNU1-73P-201ENST00000383971 164 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 RNU6-1105P-201ENST00000384774 107 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AL138885.1-201ENST00000405921 675 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 MTCYBP2-201ENST00000407745 171 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 SNORA3.3-201ENST00000408712 125 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 BX276092.3-201ENST00000424182 230 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC092573.2-201ENST00000434546 243 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC022447.4-201ENST00000504053 364 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 SCARNA14-201ENST00000516903 136 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 RNU6-1183P-201ENST00000517054 60 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC022695.1-201ENST00000522089 237 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 SYF2P1-201ENST00000550658 413 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AMZ2P1-203ENST00000565833 850 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 MIR5696-201ENST00000578474 85 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 SRGNP1-201ENST00000603392 451 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC092447.9-201ENST00000603395 144 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC012468.1-201ENST00000604888 430 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC008962.1-201ENST00000605729 304 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
VSX1Q9NZR4 AL732372.2-225ENST00000642124 456 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 ZNF299P-201ENST00000406845 1804 ntBASIC3.34□□□□□ -1.87
VSX1Q9NZR4 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
VSX1Q9NZR4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AC007496.3-201ENST00000624987 3443 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 RNY1P16-201ENST00000363063 111 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 SNORA70.2-201ENST00000364506 135 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 Y_RNA.380-201ENST00000365663 111 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 Y_RNA.526-201ENST00000384572 110 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 MIR625-201ENST00000385047 85 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 RPL17P36-201ENST00000420302 549 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.33□□□□□ -1.88
VSX1Q9NZR4 PHBP14-201ENST00000512887 367 ntBASIC3.33□□□□□ -1.88
VSX1Q9NZR4 Y_RNA.687-201ENST00000516558 91 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms