Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC233263.6-201ENST00000631132 1963 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 RNA5SP50-201ENST00000363731 107 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 RNU5E-7P-201ENST00000365290 117 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 Y_RNA.447-201ENST00000384184 113 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 RNU6-472P-201ENST00000384299 107 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 SNORA48.2-201ENST00000390926 124 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 HDGFP1-201ENST00000405943 252 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AL160275.2-201ENST00000412010 394 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 SNRPEP9-201ENST00000436794 238 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC139453.3-201ENST00000493276 369 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC078918.1-201ENST00000498515 228 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC078899.3-201ENST00000599065 212 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC136601.2-201ENST00000604356 474 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC006077.1-201ENST00000604746 343 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC004805.2-201ENST00000605382 482 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 SNORA62.6-201ENST00000606322 83 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC103858.2-201ENST00000621471 543 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 AC138627.2-201ENST00000624202 601 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 SCARNA4-202ENST00000625402 129 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 U4.7-201ENST00000638126 106 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CCDC87Q9NVE4 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 RNU6-227P-201ENST00000362865 103 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 RNU6-770P-201ENST00000363929 105 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 MIR490-201ENST00000384865 128 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 RPS29P13-201ENST00000402041 169 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 Y_RNA.592-201ENST00000410274 109 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 ELOCP20-201ENST00000422460 345 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 RPL21P66-201ENST00000426566 466 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AC124916.1-201ENST00000444020 547 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AC078817.1-201ENST00000492623 435 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AL590705.4-201ENST00000532209 134 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AC023157.2-201ENST00000540596 141 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 CYP4A43P-201ENST00000568156 121 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 RAC1P9-201ENST00000604990 392 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AL591424.2-201ENST00000617023 128 ntBASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC87Q9NVE4 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 SNORD50.1-201ENST00000362987 71 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 Y_RNA.350-201ENST00000365409 98 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC092047.1-201ENST00000424997 240 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 HIGD1AP2-201ENST00000446367 280 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC115115.1-201ENST00000449927 248 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC006026.2-201ENST00000457376 180 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 SNORD105B-201ENST00000458770 79 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 RNU6-1132P-201ENST00000459214 107 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC109329.1-201ENST00000518744 317 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC034114.1-201ENST00000520293 285 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC010186.2-204ENST00000537668 439 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC007458.1-201ENST00000542812 373 ntBASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC87Q9NVE4 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 RNU6-611P-201ENST00000384276 104 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 RNU6ATAC23P-201ENST00000408448 123 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 MTND3P9-201ENST00000429526 346 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 CYCSP4-201ENST00000429682 331 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 HLA-N-201ENST00000437516 135 ntBASIC4.79□□□□□ -1.64
CCDC87Q9NVE4 SNORD127-201ENST00000458892 86 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms