Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC024940.5-201ENST00000622889 474 ntBASIC1.68□□□□□ -2.14
EXOSC4Q9NPD3 AC099654.13-201ENST00000639774 207 ntBASIC1.68□□□□□ -2.14
EXOSC4Q9NPD3 Z75746.1-201ENST00000440243 2080 ntBASIC1.68□□□□□ -2.14
EXOSC4Q9NPD3 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 SNORD3E-201ENST00000362899 217 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 Y_RNA.111-201ENST00000363248 100 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 HMGN2P39-201ENST00000398005 273 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AL023284.1-201ENST00000403956 276 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 FTH1P15-201ENST00000406984 280 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 ELOCP4-201ENST00000420090 333 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 USP9YP15-201ENST00000442391 422 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AL136380.1-201ENST00000447970 162 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 RPL23AP3-201ENST00000453844 468 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 BZW1P2-201ENST00000473537 826 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 UBE2DNL-203ENST00000474922 222 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 RNU2-44P-201ENST00000516795 194 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 RNU6-232P-201ENST00000517144 64 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AC107953.1-201ENST00000522216 297 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AC022878.1-201ENST00000530684 149 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AC012065.4-201ENST00000602445 679 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AL359999.1-201ENST00000604513 294 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AC091932.3-201ENST00000624223 323 ntBASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.67□□□□□ -2.14
EXOSC4Q9NPD3 RNU6-1159P-201ENST00000362933 107 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 SNORA67.3-201ENST00000384366 140 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 RN7SKP223-201ENST00000410582 62 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC097463.2-201ENST00000421074 142 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AL139415.2-201ENST00000431968 163 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 TAF9P1-201ENST00000445421 515 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 TAF9P2-201ENST00000454958 515 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 RAP1BP2-201ENST00000478270 544 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC140059.1-201ENST00000489238 361 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 HMGB3P17-201ENST00000504195 649 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 RBBP4P6-201ENST00000508098 202 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC119751.5-201ENST00000514077 770 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 RNU6-123P-201ENST00000516163 102 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 RNU2-46P-201ENST00000517038 113 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 RPL21P5-201ENST00000554662 472 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC092325.1-201ENST00000566449 554 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 MIR4419B-201ENST00000577260 68 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 MIR3126-201ENST00000577443 74 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 MIR4287-201ENST00000579398 78 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC009977.1-201ENST00000586015 570 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC174048.1-201ENST00000603389 144 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AL627230.6-201ENST00000611129 280 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AF246928.1-201ENST00000623768 87 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC079248.2-201ENST00000623779 326 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 AC007494.3-201ENST00000624660 743 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 TEX21P-201ENST00000447107 1476 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 ZNF702P-202ENST00000434269 1966 ntBASIC1.66□□□□□ -2.14
EXOSC4Q9NPD3 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
EXOSC4Q9NPD3 AC073343.1-201ENST00000328239 651 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-858P-201ENST00000362436 107 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-553P-201ENST00000364047 96 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 SNORA24.1-201ENST00000384401 135 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 Y_RNA.500-201ENST00000384466 111 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 CISD1P1-201ENST00000393907 327 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AL031577.2-201ENST00000404133 280 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 SNORA3.2-201ENST00000408221 125 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 RNU2-63P-201ENST00000410792 194 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 RNA5SP450-201ENST00000411206 102 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 RNU6-195P-201ENST00000411352 109 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC104850.1-201ENST00000435940 476 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 MTND1P30-201ENST00000441241 901 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 RPL7P12-201ENST00000446719 750 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AL133217.1-201ENST00000450980 425 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 RPL23AP42-201ENST00000471152 471 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 RPL30P6-201ENST00000475925 342 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC108078.2-201ENST00000510750 236 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC008549.1-201ENST00000512900 643 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 RNA5SP137-201ENST00000516833 135 ntBASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.65□□□□□ -2.15
EXOSC4Q9NPD3 AC022616.3-201ENST00000523940 148 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms