Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC138393.1-203ENST00000327086 343 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 RNU6-777P-201ENST00000364265 104 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 RNU6-898P-201ENST00000365627 104 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
USP42Q9H9J4 MIR613-201ENST00000385248 95 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 MIR1284-201ENST00000408337 120 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 AL353621.1-201ENST00000418219 243 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.61□□□□□ -2.15
USP42Q9H9J4 RPL7P34-201ENST00000433316 712 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.61□□□□□ -2.15
USP42Q9H9J4 HSPE1P21-201ENST00000438283 308 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 CALM1P1-201ENST00000442082 433 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 MTND1P18-201ENST00000448191 573 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 MTND1P16-201ENST00000465177 898 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 RPS29P1-201ENST00000465274 159 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC113347.3-201ENST00000509113 148 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC008837.2-201ENST00000513076 418 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC034114.1-201ENST00000520293 285 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC1.61□□□□□ -2.15
USP42Q9H9J4 MTND3P13-201ENST00000574391 343 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC073413.2-201ENST00000604332 360 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 NDUFA8P1-201ENST00000605525 367 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 AC106052.1-201ENST00000608029 497 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 Z99571.1-201ENST00000636677 394 ntBASIC1.61□□□□□ -2.15
USP42Q9H9J4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
USP42Q9H9J4 RNU1-23P-201ENST00000363361 144 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 RNU6-1080P-201ENST00000383982 107 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 SNORA40.2-201ENST00000390847 128 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 RN7SKP51-201ENST00000410781 304 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 SRIP3-201ENST00000413200 219 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 VN1R36P-201ENST00000414936 291 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 OR51A5P-201ENST00000415429 942 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 AL360221.1-201ENST00000445989 335 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.6□□□□□ -2.15
USP42Q9H9J4 EEF1E1P1-201ENST00000446998 430 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.6□□□□□ -2.15
USP42Q9H9J4 RNU7-59P-201ENST00000459101 61 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 AC093752.1-206ENST00000511823 336 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC1.6□□□□□ -2.15
USP42Q9H9J4 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC1.6□□□□□ -2.15
USP42Q9H9J4 AL713866.2-201ENST00000603579 219 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 ELOCP5-201ENST00000604924 333 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.6□□□□□ -2.15
USP42Q9H9J4 AC084824.5-201ENST00000612009 413 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 AL136313.1-201ENST00000624804 202 ntBASIC1.6□□□□□ -2.15
USP42Q9H9J4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
USP42Q9H9J4 AP000776.1-201ENST00000530032 1663 ntBASIC1.59□□□□□ -2.15
USP42Q9H9J4 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 SNORA40.19-201ENST00000390846 128 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 RNU6-278P-201ENST00000390945 109 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 AL359634.1-202ENST00000404721 284 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 MTCO1P17-201ENST00000411522 491 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 AC138623.1-201ENST00000418060 216 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.59□□□□□ -2.16
USP42Q9H9J4 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.59□□□□□ -2.16
USP42Q9H9J4 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC1.59□□□□□ -2.16
USP42Q9H9J4 OR5B19P-201ENST00000531766 928 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.59□□□□□ -2.16
USP42Q9H9J4 FAM106DP-201ENST00000586416 501 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.59□□□□□ -2.16
USP42Q9H9J4 AC090970.3-201ENST00000612566 866 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 PVT1_3.1-201ENST00000620853 95 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.59□□□□□ -2.16
USP42Q9H9J4 AC099654.9-201ENST00000637055 678 ntBASIC1.59□□□□□ -2.16
USP42Q9H9J4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
USP42Q9H9J4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.58□□□□□ -2.16
USP42Q9H9J4 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
USP42Q9H9J4 RNU6-288P-201ENST00000363690 104 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AC119751.3-201ENST00000399720 670 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AL359704.1-201ENST00000411586 781 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 OR9R1P-201ENST00000412200 877 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC1.58□□□□□ -2.16
USP42Q9H9J4 MTCO2P25-201ENST00000447065 681 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 KATNBL1P6-201ENST00000453433 915 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 BTF3P15-201ENST00000455606 336 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.58□□□□□ -2.16
USP42Q9H9J4 AC023194.1-201ENST00000493084 308 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 RPF2P2-201ENST00000504693 896 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.58□□□□□ -2.16
USP42Q9H9J4 AC091965.2-201ENST00000512324 613 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC1.58□□□□□ -2.16
USP42Q9H9J4 SNORA48.11-201ENST00000517015 89 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AP005660.1-201ENST00000522972 293 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AP000907.2-201ENST00000530827 353 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.58□□□□□ -2.16
USP42Q9H9J4 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.58□□□□□ -2.16
USP42Q9H9J4 HSBP1P1-201ENST00000555205 166 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.58□□□□□ -2.16
USP42Q9H9J4 VN1R83P-201ENST00000595685 445 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 BNIP3P25-201ENST00000596023 559 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AC112220.2-201ENST00000605513 533 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AC092574.1-201ENST00000609771 420 ntBASIC1.58□□□□□ -2.16
USP42Q9H9J4 AC126544.2-201ENST00000625174 749 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms