Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 AP001486.3-201ENST00000615334 372 ntBASIC1.96□□□□□ -2.1
SCN2AQ99250 AC139792.2-201ENST00000624218 587 ntBASIC1.96□□□□□ -2.1
SCN2AQ99250 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SCN2AQ99250 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.96□□□□□ -2.1
SCN2AQ99250 AP006437.1-201ENST00000641440 3685 ntBASIC1.96□□□□□ -2.1
SCN2AQ99250 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.95□□□□□ -2.1
SCN2AQ99250 MTND4P1-201ENST00000457501 1466 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AL359854.1-201ENST00000614203 1594 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 Y_RNA.22-201ENST00000362492 102 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 SNORD114-1-201ENST00000362705 72 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RNA5SP138-201ENST00000365098 114 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SCN2AQ99250 RNU6-259P-201ENST00000383999 107 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RNU6-39P-201ENST00000384344 107 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 SNORA67.3-201ENST00000384366 140 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RNU6-456P-201ENST00000384493 107 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 Y_RNA.534-201ENST00000384599 112 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 MIR454-201ENST00000390180 115 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 SNORA17.3-201ENST00000391159 129 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
SCN2AQ99250 AC096649.2-201ENST00000416186 393 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN2AQ99250 AL445685.2-201ENST00000422551 342 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AL358075.3-201ENST00000426289 226 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN2AQ99250 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.95□□□□□ -2.1
SCN2AQ99250 AL353706.1-201ENST00000436728 494 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AL122001.1-201ENST00000457027 370 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RNU6-405P-201ENST00000516637 110 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RNU1-40P-201ENST00000516816 164 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RNU1-97P-201ENST00000516872 164 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.95□□□□□ -2.1
SCN2AQ99250 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.95□□□□□ -2.1
SCN2AQ99250 CR383656.8-201ENST00000549046 145 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.95□□□□□ -2.1
SCN2AQ99250 LRRC37A5P-203ENST00000580181 585 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN2AQ99250 UCA1.1-201ENST00000620952 75 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 FO624990.1-201ENST00000636373 85 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
SCN2AQ99250 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
SCN2AQ99250 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SCN2AQ99250 HSPA8P4-201ENST00000511877 1920 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
SCN2AQ99250 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SCN2AQ99250 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
SCN2AQ99250 RNU6-778P-201ENST00000363269 103 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RNU6-960P-201ENST00000364056 120 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RN7SKP226-201ENST00000364912 300 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 SET-203ENST00000372688 801 ntTSL 2 BASIC1.95□□□□□ -2.1
SCN2AQ99250 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN2AQ99250 SNORA75B-201ENST00000384053 137 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 Y_RNA.480-201ENST00000384364 102 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 SNORA80E-201ENST00000384744 137 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 CISD1P1-201ENST00000393907 327 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AL590002.1-201ENST00000406554 418 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AC092427.1-202ENST00000430569 476 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AL451074.3-201ENST00000437709 472 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN2AQ99250 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN2AQ99250 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN2AQ99250 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.95□□□□□ -2.1
SCN2AQ99250 AC091133.4-201ENST00000511142 308 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RNA5SP458-201ENST00000516188 119 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RN7SKP219-201ENST00000516825 296 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 RNA5SP337-201ENST00000517007 109 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.95□□□□□ -2.1
SCN2AQ99250 AL121821.2-201ENST00000556081 394 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 MIR1273C-201ENST00000578669 77 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 SNRPGP19-201ENST00000603826 189 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AC112191.3-201ENST00000604371 277 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AP000860.1-201ENST00000605250 559 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AC245008.1-201ENST00000608123 476 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.95□□□□□ -2.1
SCN2AQ99250 AL449363.1-201ENST00000617815 186 ntBASIC1.95□□□□□ -2.1
SCN2AQ99250 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.95□□□□□ -2.1
SCN2AQ99250 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.95□□□□□ -2.1
SCN2AQ99250 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
SCN2AQ99250 MIR412-201ENST00000362142 91 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 RNY4P16-201ENST00000364768 94 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 Y_RNA.367-201ENST00000365544 101 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
SCN2AQ99250 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.94□□□□□ -2.1
SCN2AQ99250 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.94□□□□□ -2.1
SCN2AQ99250 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.94□□□□□ -2.1
SCN2AQ99250 MTCO2P16-201ENST00000436962 677 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 WASF1P1-201ENST00000447560 1131 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 RPS29P15-201ENST00000458329 171 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 RPS27P26-201ENST00000494583 239 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SCN2AQ99250 MIR892C-201ENST00000516410 77 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 RN7SKP40-201ENST00000517211 242 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 SUB1P1-201ENST00000524415 382 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 AL139286.2-201ENST00000606838 396 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 AL391813.2-201ENST00000609113 322 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.94□□□□□ -2.1
SCN2AQ99250 AC245884.12-201ENST00000615364 59 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 Z82209.1-201ENST00000422141 2135 ntBASIC1.94□□□□□ -2.1
SCN2AQ99250 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SCN2AQ99250 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms