Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC121247.2-201ENST00000604776 136 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 AL158032.1-201ENST00000605401 106 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 AL021997.1-201ENST00000605757 193 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 AC068276.1-201ENST00000605793 379 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 AP001506.1-201ENST00000615444 211 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 AC138627.2-201ENST00000624202 601 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 AC110994.2-201ENST00000635481 492 ntBASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CCDC54Q8NEL0 MTND4P1-201ENST00000457501 1466 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 RNA5SP125-201ENST00000364843 120 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 RNU6-641P-201ENST00000384006 107 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 SNORA75-201ENST00000384158 137 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 RNU6-19P-201ENST00000384718 107 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 MIR1-2-201ENST00000384961 85 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 MIR221-201ENST00000385135 110 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 SNORA11.1-201ENST00000408133 129 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 Z92545.1-201ENST00000411782 234 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 USP9YP6-201ENST00000413550 854 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 BX295541.1-201ENST00000417774 250 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 MTCYBP5-201ENST00000423752 1135 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 PTGES3P4-201ENST00000426243 356 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 HIGD1AP2-201ENST00000446367 280 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 snoU109.2-201ENST00000459316 135 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 RPL37P6-201ENST00000460682 294 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC025033.1-201ENST00000463883 194 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC126389.1-201ENST00000477436 290 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 SCARNA16.3-201ENST00000516595 184 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 SNORA18.6-201ENST00000516792 115 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 RNU6-143P-201ENST00000516942 93 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 SCARNA3-201ENST00000517097 143 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 OR5AQ1P-201ENST00000527596 927 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC010186.2-204ENST00000537668 439 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC092325.1-201ENST00000566449 554 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 MTCYBP33-201ENST00000575007 1130 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC073539.2-201ENST00000597113 165 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC110760.3-201ENST00000598794 467 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AP001486.3-201ENST00000615334 372 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC009233.1-201ENST00000616477 371 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC011155.2-201ENST00000623202 216 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AL160394.1-201ENST00000624765 724 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 AC009487.4-201ENST00000624969 3585 ntBASIC1.89□□□□□ -2.11
CCDC54Q8NEL0 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 SNORD115-7-201ENST00000365306 82 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AF228730.1-201ENST00000397972 663 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 Y_RNA.623-201ENST00000411128 95 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 RN7SKP142-201ENST00000411236 328 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AL365338.1-201ENST00000422282 858 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AC137499.1-201ENST00000427602 88 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 MTCO3P5-201ENST00000433620 714 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 KRTAP19-11P-201ENST00000439851 104 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AL162395.1-201ENST00000457882 422 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 RNA5SP233-201ENST00000459153 113 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AC117522.1-201ENST00000509821 380 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AC008413.1-201ENST00000511864 177 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 SMURF2P1-201ENST00000514992 481 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AP003072.2-201ENST00000527756 676 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 CBX3P7-201ENST00000532876 502 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 SEPT7P9-203ENST00000604116 343 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AL359547.2-201ENST00000615810 418 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 SDR42E1P4-201ENST00000620894 481 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC54Q8NEL0 AC092881.1-201ENST00000638218 2733 ntBASIC1.87□□□□□ -2.11
CCDC54Q8NEL0 RNU4-91P-201ENST00000364778 135 ntBASIC1.87□□□□□ -2.11
CCDC54Q8NEL0 RNA5SP138-201ENST00000365098 114 ntBASIC1.87□□□□□ -2.11
CCDC54Q8NEL0 RNU6-395P-201ENST00000365662 106 ntBASIC1.87□□□□□ -2.11
CCDC54Q8NEL0 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC54Q8NEL0 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC54Q8NEL0 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC54Q8NEL0 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms