Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 U4.3-201ENST00000621047 82 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC099654.13-201ENST00000639774 207 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 ZNF720P1-201ENST00000562403 1939 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 KPNA2P1-201ENST00000458289 1591 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 SNORA25B-201ENST00000365507 128 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-297P-201ENST00000384636 107 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 U8.14-201ENST00000390843 143 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 MTCYBP36-201ENST00000404146 440 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 USP9YP27-201ENST00000418455 438 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 RPS27AP14-201ENST00000422868 454 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 DLGAP5P1-201ENST00000430307 464 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 RPS24P1-201ENST00000438550 371 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 TPT1P7-201ENST00000458300 517 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC010424.1-201ENST00000506336 297 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC109927.2-201ENST00000506416 303 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 MTCO3P7-201ENST00000510008 774 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 PCMTD1P2-201ENST00000565017 355 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AL109918.3-201ENST00000603072 338 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC009878.1-201ENST00000621819 340 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 AL603839.4-201ENST00000624658 1005 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 MIR3529-201ENST00000637713 78 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 MTND4P4-201ENST00000439033 1366 ntBASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
ZNF540Q8NDQ6 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 SNORD114-30-201ENST00000364448 72 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 MIR27B-201ENST00000385129 97 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 HMGN2P39-201ENST00000398005 273 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AL353777.1-201ENST00000425552 326 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 KATNBL1P3-201ENST00000443475 909 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 SNRPGP9-201ENST00000456025 225 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AP000797.1-201ENST00000478870 387 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC079140.3-201ENST00000511111 550 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 FABP5P5-201ENST00000515537 406 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 RNA5SP148-201ENST00000516527 94 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC034114.1-201ENST00000520293 285 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AP003122.4-201ENST00000530980 758 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 MTCYBP33-201ENST00000575007 1130 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AL713866.2-201ENST00000603579 219 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 RN7SKP299-201ENST00000606679 301 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AL391813.2-201ENST00000609113 322 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC092140.2-201ENST00000618027 521 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC009159.1-201ENST00000618386 642 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC092656.1-203ENST00000624134 423 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC139792.2-201ENST00000624218 587 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AC090582.1-201ENST00000636321 199 ntBASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.2□□□□□ -2.06
ZNF540Q8NDQ6 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-511P-201ENST00000363496 107 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-960P-201ENST00000364056 120 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 RNU5E-6P-201ENST00000365574 115 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 SMIM11P1-201ENST00000369586 178 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-166P-201ENST00000384371 107 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-348P-201ENST00000384386 107 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 DEFB108C-201ENST00000400154 252 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 GSTA9P-201ENST00000406231 611 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 RNU2-36P-201ENST00000410361 191 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 RNU6-248P-201ENST00000410720 107 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AL135786.1-201ENST00000415892 214 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC138623.1-201ENST00000418060 216 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 OOSP1P1-201ENST00000423265 274 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 RPL7P43-201ENST00000478876 753 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 TRBV12-1-201ENST00000479785 344 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC079804.2-201ENST00000490376 200 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC022493.1-201ENST00000492984 337 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 MTND4P2-201ENST00000507767 1203 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 MRPS17P9-201ENST00000511924 393 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 AC091965.2-201ENST00000512324 613 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 Y_RNA.655-201ENST00000515919 96 ntBASIC2.19□□□□□ -2.06
ZNF540Q8NDQ6 SNORA4.4-201ENST00000515921 135 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms