Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-1026P-201ENST00000384465 108 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-790P-201ENST00000384479 105 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 MIR578-201ENST00000384828 96 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AL445529.1-201ENST00000398713 389 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 RNU6ATAC23P-201ENST00000408448 123 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-1156P-201ENST00000410365 100 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-607P-201ENST00000411283 108 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AL030996.1-201ENST00000411430 235 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 UBE2D3P2-201ENST00000424409 445 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AL133396.1-201ENST00000432048 687 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AC073910.1-201ENST00000445047 438 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AL360271.2-201ENST00000447710 161 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 MIR4273-201ENST00000582824 84 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 MIR548AC-201ENST00000585049 88 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AC125232.2-201ENST00000592457 143 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AL109918.3-201ENST00000603072 338 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AC006557.5-201ENST00000603126 811 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 AC034102.8-201ENST00000615146 484 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 MIR4272-201ENST00000635924 64 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 TNPO1P3-201ENST00000436471 2662 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.447-201ENST00000384184 113 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.534-201ENST00000384599 112 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.552-201ENST00000384665 112 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-713P-201ENST00000384761 107 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 U3.26-201ENST00000391236 204 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 S100A11P2-201ENST00000467589 312 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 AC022447.4-201ENST00000504053 364 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 APOOP4-201ENST00000513530 597 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-1143P-201ENST00000516125 104 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 RNU2-53P-201ENST00000516257 147 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 Vault.1-201ENST00000516474 102 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.715-201ENST00000517082 110 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 AL121603.1-201ENST00000553815 142 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 LRRC37A5P-203ENST00000580181 585 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 MIR5188-201ENST00000583467 113 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 AL033523.1-201ENST00000605153 153 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 RNA5SP108-201ENST00000605921 117 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 AC022149.2-201ENST00000621061 203 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 NCAPGP1-201ENST00000505112 1814 ntBASIC4.41□□□□□ -1.7
USHBP1Q8N6Y0 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.4□□□□□ -1.7
USHBP1Q8N6Y0 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.4□□□□□ -1.7
USHBP1Q8N6Y0 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
USHBP1Q8N6Y0 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.4□□□□□ -1.7
USHBP1Q8N6Y0 SNORD73A-201ENST00000386062 65 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 RPL21P1-201ENST00000399532 476 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AL138885.1-201ENST00000405921 675 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AL353621.1-201ENST00000418219 243 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 RPL21P2-201ENST00000440049 481 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 DAP3P1-201ENST00000441522 278 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AC133473.1-201ENST00000455173 299 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AC093852.1-201ENST00000503587 266 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 VWA8P1-201ENST00000510889 176 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AC008716.1-201ENST00000511084 513 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 ACA59.1-201ENST00000515966 143 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 MTND4LP5-201ENST00000605152 292 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 MIR486-1-201ENST00000612171 68 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 SNORD39.4-201ENST00000620099 78 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 AC008669.1-201ENST00000565823 2178 ntBASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.4□□□□□ -1.71
USHBP1Q8N6Y0 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 MTND5P27-201ENST00000428871 1720 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 Y_RNA.324-201ENST00000365165 102 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 CYCSP33-201ENST00000414485 327 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 PGBD4P6-201ENST00000421501 610 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 SNORD108-201ENST00000459332 71 ntBASIC4.39□□□□□ -1.71
USHBP1Q8N6Y0 VN1R104P-201ENST00000505115 1009 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms