Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNU5F-3P-201ENST00000363767 117 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 SNORD115-8-201ENST00000363856 82 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RNU1-132P-201ENST00000364300 164 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 Y_RNA.275-201ENST00000364726 110 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 SNORD32A-201ENST00000364805 84 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 SNORD115-38-201ENST00000365037 82 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RNY1P5-201ENST00000383890 115 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 Y_RNA.506-201ENST00000384494 102 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 SNORA46.1-201ENST00000391069 153 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RNU6-1197P-201ENST00000391183 107 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RNU6-1140P-201ENST00000410517 106 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RPL19P1-201ENST00000411635 428 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 AC098831.1-201ENST00000440661 216 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RPL23AP81-201ENST00000455252 467 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RPL23AP14-201ENST00000468281 468 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RPL7P47-201ENST00000497299 556 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 AC097462.2-201ENST00000504623 481 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 AC093840.1-201ENST00000511599 336 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RNA5SP49-201ENST00000516450 115 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 IGHVII-62-1-201ENST00000519283 235 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 CR383656.8-201ENST00000549046 145 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 AC027288.2-201ENST00000553028 243 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 MIR6134-201ENST00000617606 109 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 AC011944.2-201ENST00000624440 683 ntBASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
UBE3DQ7Z6J8 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 RNU5B-2P-201ENST00000363036 113 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 RNU6-778P-201ENST00000363269 103 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 Y_RNA.122-201ENST00000363331 96 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 RNA5SP509-201ENST00000364577 119 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 Y_RNA.292-201ENST00000364904 97 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 Y_RNA.319-201ENST00000365138 92 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 RNU6-187P-201ENST00000384139 106 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 SNORA29-201ENST00000384183 140 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 MTCO2P33-201ENST00000402100 465 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 HMGN2P30-201ENST00000423237 256 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 AC069285.2-201ENST00000440210 275 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 AL031659.1-201ENST00000447075 539 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 AC117440.1-201ENST00000474107 571 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 RPL26P26-201ENST00000480251 434 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 AC078918.1-201ENST00000498515 228 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 RNU1-103P-201ENST00000516502 125 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 RNA5SP73-201ENST00000516744 108 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 AC087441.2-201ENST00000529141 262 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 MIR5571-201ENST00000577998 113 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 MIR4277-201ENST00000578298 84 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 MZT1P2-201ENST00000604387 248 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 MIR7641-1-201ENST00000627518 61 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 U6.106-201ENST00000636360 105 ntBASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.06□□□□□ -1.76
UBE3DQ7Z6J8 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 AC126755.2-208ENST00000327792 462 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 AC138969.1-213ENST00000331436 462 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 FTLP6-201ENST00000355274 422 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 RNU1-14P-201ENST00000362759 152 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 Y_RNA.136-201ENST00000363444 102 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 RNU6-740P-201ENST00000364734 105 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 RNU6-926P-201ENST00000384075 107 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 RNU6-658P-201ENST00000384606 106 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 Y_RNA.570-201ENST00000384750 101 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 MIR888-201ENST00000401186 77 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 Y_RNA.590-201ENST00000410140 107 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 RNU2-61P-201ENST00000411069 191 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 COX6CP10-201ENST00000416832 224 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 RPL18P10-201ENST00000425606 538 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 AL512844.2-201ENST00000433990 593 ntBASIC4.05□□□□□ -1.76
UBE3DQ7Z6J8 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms