Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL138713.1-201ENST00000624026 2130 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
USP54Q70EL1 SNORA25B-201ENST00000365507 128 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 RNU6-16P-201ENST00000384385 107 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 MIR508-201ENST00000384857 115 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 MIR1283-2-201ENST00000408621 87 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 SKA2P1-201ENST00000425592 390 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 RPL39P29-201ENST00000447779 157 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 RPL39P6-201ENST00000448289 150 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 MTND1P9-201ENST00000453775 944 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 OR2A41P-201ENST00000473586 105 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC0.92□□□□□ -2.26
USP54Q70EL1 SMURF2P1-201ENST00000514992 481 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.92□□□□□ -2.26
USP54Q70EL1 AP003072.2-201ENST00000527756 676 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 AC090615.1-201ENST00000577519 154 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 MIR4422-201ENST00000581938 83 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 MIR8074-201ENST00000615081 81 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 AC104820.1-201ENST00000624183 307 ntBASIC0.92□□□□□ -2.26
USP54Q70EL1 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
USP54Q70EL1 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.92□□□□□ -2.26
USP54Q70EL1 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.92□□□□□ -2.26
USP54Q70EL1 Y_RNA.68-201ENST00000362881 102 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AC009310.1-201ENST00000414414 451 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.91□□□□□ -2.26
USP54Q70EL1 EIF4EP2-201ENST00000422816 654 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AL358176.2-201ENST00000425769 204 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 MTND4LP14-201ENST00000429447 288 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC0.91□□□□□ -2.26
USP54Q70EL1 AL354941.1-201ENST00000438600 464 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 PTENP1-201ENST00000447117 1215 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.91□□□□□ -2.26
USP54Q70EL1 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC0.91□□□□□ -2.26
USP54Q70EL1 RNU6-703P-201ENST00000516946 107 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 RNU6-840P-201ENST00000517275 65 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC0.91□□□□□ -2.26
USP54Q70EL1 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.91□□□□□ -2.26
USP54Q70EL1 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.91□□□□□ -2.26
USP54Q70EL1 CYB5AP5-201ENST00000549779 389 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AL357094.1-201ENST00000603845 844 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 RNU6-91P-201ENST00000607774 107 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.91□□□□□ -2.26
USP54Q70EL1 AL596245.1-201ENST00000618994 362 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AL109933.3-201ENST00000619095 188 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.91□□□□□ -2.26
USP54Q70EL1 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC0.91□□□□□ -2.26
USP54Q70EL1 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
USP54Q70EL1 C1DP1-201ENST00000426049 402 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.91□□□□□ -2.26
USP54Q70EL1 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.91□□□□□ -2.26
USP54Q70EL1 AC018437.1-201ENST00000492214 406 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 RNU6-581P-201ENST00000516214 105 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AP003497.1-201ENST00000528472 562 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC0.91□□□□□ -2.26
USP54Q70EL1 AC013244.2-201ENST00000603396 103 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AC087045.1-201ENST00000605856 382 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AC009237.15-201ENST00000610252 501 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AL603758.1-201ENST00000618654 241 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AL109620.1-201ENST00000618738 1197 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AP003476.1-201ENST00000623984 516 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 AC090517.3-201ENST00000625170 141 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 Z99571.1-201ENST00000636677 394 ntBASIC0.91□□□□□ -2.26
USP54Q70EL1 RBBP8P1-201ENST00000449447 1844 ntBASIC0.9□□□□□ -2.26
USP54Q70EL1 RNU6-657P-201ENST00000383904 107 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 RNU6-637P-201ENST00000384050 107 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 SNORA70.7-201ENST00000384159 133 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 RNU6-1235P-201ENST00000384559 107 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 AC245102.2-201ENST00000448956 180 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC0.9□□□□□ -2.27
USP54Q70EL1 RNU6-498P-201ENST00000459468 107 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC0.9□□□□□ -2.27
USP54Q70EL1 RPL21P47-201ENST00000483696 477 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.9□□□□□ -2.27
USP54Q70EL1 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.9□□□□□ -2.27
USP54Q70EL1 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC0.9□□□□□ -2.27
USP54Q70EL1 AC022861.1-201ENST00000522981 663 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 AL713866.2-201ENST00000603579 219 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
USP54Q70EL1 AC006213.5-201ENST00000619673 288 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 AP003485.1-201ENST00000625093 753 ntBASIC0.9□□□□□ -2.27
USP54Q70EL1 NACAP2-201ENST00000318548 624 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 SNRPEP3-201ENST00000338402 276 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 MIR26B-201ENST00000362251 77 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 RNU6-28P-201ENST00000362378 107 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 Y_RNA.67-201ENST00000362870 100 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 SNORA25.8-201ENST00000364831 128 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 TAF13P2-201ENST00000416876 286 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.89□□□□□ -2.27
USP54Q70EL1 MTND4LP7-201ENST00000431728 294 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 PTGES3P1-201ENST00000439531 483 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.89□□□□□ -2.27
USP54Q70EL1 AL161651.1-201ENST00000440882 223 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 AC007000.2-201ENST00000442564 487 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 AC079448.1-201ENST00000449377 373 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 AP001025.1-201ENST00000486139 332 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 AC117454.1-201ENST00000491120 168 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 AC067942.3-201ENST00000512025 362 ntBASIC0.89□□□□□ -2.27
USP54Q70EL1 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.89□□□□□ -2.27
USP54Q70EL1 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.89□□□□□ -2.27
USP54Q70EL1 AL031775.1-201ENST00000607014 887 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms