Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 LRRC34P1-201ENST00000542742 915 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 AC109446.2-201ENST00000567872 497 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 MIR5002-201ENST00000584713 97 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 MIR548AC-201ENST00000585049 88 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 AL157786.1-207ENST00000627771 695 ntBASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC40Q4G0X9 OR56A5-201ENST00000340110 738 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 RNU6-942P-201ENST00000363002 107 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 SNORD14B-201ENST00000364533 90 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 SNORA16B-201ENST00000364674 135 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 RNU6-169P-201ENST00000365336 107 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 RNU6-61P-201ENST00000365528 109 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 MIR578-201ENST00000384828 96 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AC127391.1-201ENST00000411737 98 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 RPS3AP3-201ENST00000411933 242 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 NDUFB1P2-201ENST00000449477 176 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AL021397.1-201ENST00000451806 248 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 SNRPFP4-201ENST00000456366 242 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AC117522.2-201ENST00000510049 657 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 FAM92A1P1-201ENST00000528023 890 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AC008521.1-201ENST00000587471 187 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AL138889.2-201ENST00000603883 242 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AL121992.2-201ENST00000606262 256 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AL133173.2-201ENST00000614270 90 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 MIR5739-201ENST00000619803 80 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 AL603839.4-201ENST00000624658 1005 ntBASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.3□□□□□ -2.04
CCDC40Q4G0X9 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 RNA5SP160-201ENST00000364866 120 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 RNU6-72P-201ENST00000384285 79 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 MIR10A-201ENST00000385043 110 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 CYCSP46-201ENST00000423569 204 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 RPL23AP7-203ENST00000449021 469 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC025033.1-201ENST00000463883 194 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC008413.1-201ENST00000511864 177 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 RNU1-40P-201ENST00000516816 164 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 RNU1-97P-201ENST00000516872 164 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 CYCSP26-201ENST00000534107 320 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC026464.5-201ENST00000562497 722 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC009063.1-201ENST00000563342 702 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC002984.1-201ENST00000591692 448 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 APOOP1-201ENST00000604695 592 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 Z99289.3-201ENST00000605586 594 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 U6.42-201ENST00000618440 107 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC091304.6-201ENST00000619761 202 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC098657.3-201ENST00000620434 263 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 AC019226.2-201ENST00000625973 424 ntBASIC2.29□□□□□ -2.04
CCDC40Q4G0X9 RBBP8P1-201ENST00000449447 1844 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 RNY4P34-201ENST00000364779 95 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 RNU6-1179P-201ENST00000384667 107 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 RNU2-40P-201ENST00000410833 196 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 MTATP6P16-201ENST00000434543 526 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AC117503.1-201ENST00000472241 394 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 Vault.3-201ENST00000516676 95 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 Y_RNA.717-201ENST00000517106 92 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AP000889.1-201ENST00000530968 660 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AC136619.2-201ENST00000563361 631 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 MTCYBP33-201ENST00000575007 1130 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 MIR4435-1-201ENST00000582552 80 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AL713866.2-201ENST00000603579 219 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AL355297.2-201ENST00000604792 129 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AC008250.2-201ENST00000615261 205 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AC108479.2-201ENST00000617314 601 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AP003400.5-201ENST00000624827 617 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 AC131280.1-202ENST00000624067 4211 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 ZNF658B-202ENST00000615961 3375 ntBASIC2.28□□□□□ -2.04
CCDC40Q4G0X9 RNU4-21P-201ENST00000362802 126 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 RNA5SP508-201ENST00000411327 119 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 RNA5SP111-201ENST00000411386 101 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 EEF1A1P40-201ENST00000412883 573 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 AL356379.1-201ENST00000414105 126 ntBASIC2.27□□□□□ -2.05
CCDC40Q4G0X9 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms