Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC107032.1-201ENST00000485945 480 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AC026414.1-201ENST00000504046 698 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AC105313.1-201ENST00000509121 353 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 MIR4698-201ENST00000577795 80 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AC008133.2-201ENST00000624540 351 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AP003485.1-201ENST00000625093 753 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 RNU5B-1-201ENST00000363286 116 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 RNU6-1280P-201ENST00000365211 107 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 SNORD65.1-201ENST00000390889 71 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 MIR5708-201ENST00000579723 85 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AL133445.2-201ENST00000611191 527 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 AL773524.1-201ENST00000614065 229 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 PCMTD1P7-201ENST00000634506 357 ntBASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.22□□□□□ -2.21
CCDC88AQ3V6T2 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 SNORD26-201ENST00000384147 75 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 MIR676-201ENST00000390702 67 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 U8.14-201ENST00000390843 143 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 RNA5SP212-201ENST00000391223 107 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 MTND4P15-201ENST00000437913 1033 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 BTBD7P2-201ENST00000441962 620 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 RNU1-98P-201ENST00000458992 160 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 MTCO3P27-201ENST00000514397 196 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-581P-201ENST00000516214 105 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 OR6C7P-201ENST00000547875 934 ntBASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC1.21□□□□□ -2.22
CCDC88AQ3V6T2 AC018630.2-201ENST00000534866 2403 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 snoZ40.1-201ENST00000364540 72 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 SNORA23-201ENST00000365128 182 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-609P-201ENST00000365459 107 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 MIR1283-2-201ENST00000408621 87 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 SKA2P1-201ENST00000425592 390 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 SDAD1P3-201ENST00000427380 333 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 MTND1P28-201ENST00000435623 950 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AL353706.1-201ENST00000436728 494 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 MTND5P14-201ENST00000441481 1267 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 MIR1273G-201ENST00000577677 100 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 ELOCP5-201ENST00000604924 333 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 MIR216A-201ENST00000385063 110 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 RNU2-49P-201ENST00000410666 184 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AL160275.3-201ENST00000423876 471 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 UBE2D3P3-201ENST00000426992 425 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AC244035.1-201ENST00000430042 390 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 SEPT7P5-201ENST00000434048 306 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 RPL23AP6-201ENST00000446637 472 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 RPS27P1-201ENST00000450552 247 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-1028P-201ENST00000517164 93 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-840P-201ENST00000517275 65 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 LRRC6P1-201ENST00000532188 885 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AC087897.1-201ENST00000550134 156 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 MIR4782-201ENST00000577987 79 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AC010900.2-201ENST00000604508 210 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 MIR6857-201ENST00000613267 93 ntBASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC88AQ3V6T2 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 RNU6-1284P-201ENST00000363701 100 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 RNU2-63P-201ENST00000410792 194 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AC019178.2-201ENST00000423595 505 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AC092648.1-201ENST00000425870 423 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 GPM6BP2-201ENST00000432046 144 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 NEFMP1-201ENST00000443423 1006 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 MTATP6P30-201ENST00000443540 664 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 GPM6BP1-201ENST00000446387 144 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 HSPE1P24-201ENST00000450782 238 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 snoU109.1-201ENST00000459339 135 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AC092989.1-201ENST00000481235 277 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 HSPE1P4-201ENST00000550617 308 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AC136619.2-201ENST00000563361 631 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 SNRPGP17-201ENST00000603780 214 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AC087045.1-201ENST00000605856 382 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AL138955.1-201ENST00000622881 1040 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AL163152.1-201ENST00000642001 374 ntBASIC1.19□□□□□ -2.22
CCDC88AQ3V6T2 AL442644.1-201ENST00000454390 3105 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms