Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 CDC27P3-201ENST00000635418 1910 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 AC004520.1-201ENST00000608362 1413 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 MAPK10-266ENST00000641066 6555 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 RNU1-105P-201ENST00000363470 161 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 U3.6-201ENST00000363622 211 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 RNA5SP139-201ENST00000364340 117 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 Y_RNA.248-201ENST00000364501 109 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 MIR518D-201ENST00000385014 87 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 RNU6-373P-201ENST00000411247 98 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 AC023141.4-201ENST00000412031 328 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 OR9R1P-201ENST00000412200 877 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 RPS15AP5-201ENST00000436276 388 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 PRPS1P1-201ENST00000445305 876 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 MTCO3P38-201ENST00000468910 766 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 AC104472.2-201ENST00000469035 601 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 FAM92A1P2-202ENST00000504766 877 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 MTND3P25-201ENST00000509243 135 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 RNU1-86P-201ENST00000516108 154 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 RNU1-107P-201ENST00000516617 154 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 RN7SKP272-201ENST00000516988 232 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 CENPUP1-201ENST00000526649 1202 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 AC007536.1-201ENST00000533382 349 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 BNIP3P6-201ENST00000549284 499 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 OR11H5P-201ENST00000554039 926 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 LINC00933-203ENST00000559812 219 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 AC087045.1-201ENST00000605856 382 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 U2.17-201ENST00000611454 95 ntBASIC2.95□□□□□ -1.94
COL28A1Q2UY09 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
COL28A1Q2UY09 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RNU6-384P-201ENST00000364900 104 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RNU4-66P-201ENST00000365199 138 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 MIR34A-201ENST00000385130 110 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AL356057.2-201ENST00000403318 432 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RN7SKP220-201ENST00000410611 288 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 CYCSP33-201ENST00000414485 327 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 BX682237.1-201ENST00000415016 335 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RPL32P35-201ENST00000415214 394 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RPL7P10-201ENST00000417407 739 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 ERLEC1P1-201ENST00000433806 578 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RN7SL75P-201ENST00000461926 281 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RPL21P99-201ENST00000480369 423 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC092989.1-201ENST00000481235 277 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 Y_RNA.654-201ENST00000497848 106 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RNA5SP217-201ENST00000515959 91 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC090115.3-201ENST00000553218 849 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC021739.1-201ENST00000559631 174 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC092325.1-201ENST00000566449 554 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC138761.3-201ENST00000579993 334 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC010525.2-201ENST00000590920 195 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RNU6-89P-201ENST00000606519 100 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC004832.5-201ENST00000608677 401 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 RMST_3.1-201ENST00000611651 109 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AL590808.1-201ENST00000618696 141 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 MIR7111-201ENST00000619751 72 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC091903.1-201ENST00000624322 454 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 AC024614.3-201ENST00000637860 256 ntBASIC2.94□□□□□ -1.94
COL28A1Q2UY09 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.94□□□□□ -1.94
COL28A1Q2UY09 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
COL28A1Q2UY09 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.93□□□□□ -1.94
COL28A1Q2UY09 AC096649.2-201ENST00000416186 393 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.93□□□□□ -1.94
COL28A1Q2UY09 AC063976.3-201ENST00000426849 329 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 RNU6-1208P-201ENST00000459588 107 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 RPL21P93-201ENST00000480465 489 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 AF213884.2-201ENST00000510417 903 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 SNORD19.2-201ENST00000516978 73 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 AC078814.3-201ENST00000553036 491 ntBASIC2.93□□□□□ -1.94
COL28A1Q2UY09 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.93□□□□□ -1.94
COL28A1Q2UY09 AC025281.1-201ENST00000567026 265 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms