| PAX8 | Q06710 | AC007948.1-201 | ENST00000581632 | 242 nt | TSL 5 BASIC | 2.41 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | VN1R80P-201 | ENST00000597126 | 338 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | ATP1B3P1-201 | ENST00000605365 | 821 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | AC105265.4-201 | ENST00000618391 | 306 nt | TSL 5 BASIC | 2.41 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | AC103705.1-201 | ENST00000619013 | 241 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | SMAD5-AS1_1.1-201 | ENST00000619886 | 266 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | LEPR-202 | ENST00000349533 | 8227 nt | APPRIS P1 TSL 1 (best) BASIC | 2.41 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | ATP2B1-201 | ENST00000261173 | 6777 nt | APPRIS P1 TSL 1 (best) BASIC | 2.41 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | PIK3C2G-206 | ENST00000538779 | 4963 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | MUM1L1-203 | ENST00000372552 | 3957 nt | APPRIS P1 TSL 5 BASIC | 2.4 | □□□□□ -2.02 | | |
| PAX8 | Q06710 | Y_RNA.33-201 | ENST00000362591 | 102 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | SNORD3E-201 | ENST00000362899 | 217 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | Y_RNA.100-201 | ENST00000363141 | 102 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | SNORA5B-201 | ENST00000363786 | 132 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU6-270P-201 | ENST00000364131 | 105 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | SNORA9.2-201 | ENST00000365361 | 133 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | TRAV26-1-201 | ENST00000390455 | 537 nt | APPRIS P1 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | HIST1H2APS3-201 | ENST00000403259 | 134 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | MIR1289-1-201 | ENST00000408836 | 144 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU6-1025P-201 | ENST00000410629 | 104 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC245054.2-201 | ENST00000415639 | 319 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC009161.1-201 | ENST00000417306 | 376 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AL445989.1-202 | ENST00000418943 | 776 nt | TSL 2 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | TMEM167AP1-201 | ENST00000423409 | 219 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | MTCO3P46-201 | ENST00000425787 | 232 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | MYL8P-204 | ENST00000431574 | 518 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | LANCL1-AS1-203 | ENST00000433296 | 864 nt | TSL 2 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | SNRPEP9-201 | ENST00000436794 | 238 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RPL7P12-201 | ENST00000446719 | 750 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | UQCRHP3-201 | ENST00000451503 | 251 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU7-167P-201 | ENST00000459160 | 62 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC087884.1-201 | ENST00000469738 | 328 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | HIGD1AP13-201 | ENST00000509878 | 289 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU4-49P-201 | ENST00000516080 | 140 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU6-189P-201 | ENST00000516120 | 101 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC025524.1-201 | ENST00000518489 | 606 nt | TSL 4 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | NCRNA00250-201 | ENST00000519500 | 519 nt | TSL 4 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | IL7-206 | ENST00000520269 | 456 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC114550.2-201 | ENST00000524008 | 397 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC100768.1-201 | ENST00000525512 | 506 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC243972.3-201 | ENST00000539655 | 198 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC007619.1-201 | ENST00000544086 | 412 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | SCOCP1-201 | ENST00000554676 | 349 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AL121821.1-201 | ENST00000557067 | 530 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | LARP7P1-201 | ENST00000605576 | 316 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | MIR6852-201 | ENST00000621699 | 66 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC022418.1-201 | ENST00000624118 | 445 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | PROX1-AS1-244 | ENST00000630355 | 599 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | CYP3A43-217 | ENST00000631161 | 328 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | CACNB4-238 | ENST00000636901 | 7706 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AL365361.1-201 | ENST00000566942 | 3481 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | TDRD15-201 | ENST00000405799 | 6135 nt | APPRIS P1 TSL 2 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | KLRA1P-202 | ENST00000510134 | 1410 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC121333.1-201 | ENST00000567488 | 2709 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | ESF1-202 | ENST00000617257 | 1470 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | CUL1P1-201 | ENST00000509510 | 2425 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | ZNF85-203 | ENST00000345030 | 1689 nt | APPRIS ALT2 TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | SNORD81.2-201 | ENST00000365153 | 76 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU6-395P-201 | ENST00000365662 | 106 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | CD24P4-201 | ENST00000382840 | 243 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU6-1179P-201 | ENST00000384667 | 107 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU2-68P-201 | ENST00000410878 | 191 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | CYCSP33-201 | ENST00000414485 | 327 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AL139281.1-201 | ENST00000422120 | 335 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | ZNF863P-201 | ENST00000426746 | 417 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC093151.1-201 | ENST00000427711 | 313 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC236972.1-201 | ENST00000433225 | 199 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | IFNA20P-201 | ENST00000436840 | 528 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | LINC01650-201 | ENST00000438093 | 602 nt | TSL 2 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AL359771.1-201 | ENST00000441809 | 379 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | TH2LCRR-203 | ENST00000457489 | 439 nt | TSL 3 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU6-329P-201 | ENST00000459618 | 107 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC026780.2-201 | ENST00000503489 | 730 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU1-86P-201 | ENST00000516108 | 154 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU1-107P-201 | ENST00000516617 | 154 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU6-928P-201 | ENST00000516876 | 104 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | IGHVII-62-1-201 | ENST00000519283 | 235 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC025755.1-201 | ENST00000521306 | 278 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC087241.2-201 | ENST00000535801 | 324 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC091534.1-202 | ENST00000549953 | 468 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | MAFTRR-204 | ENST00000568389 | 506 nt | TSL 4 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | MIR5692A1-201 | ENST00000580523 | 69 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC091135.1-201 | ENST00000585943 | 307 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | LINC01897-203 | ENST00000591503 | 369 nt | TSL 2 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | HSPE1P7-201 | ENST00000604681 | 321 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC007938.3-201 | ENST00000604965 | 623 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | FTX_3.1-201 | ENST00000610451 | 147 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AL121757.2-201 | ENST00000611223 | 313 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | U2.17-201 | ENST00000611454 | 95 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | Y_RNA.804-201 | ENST00000615262 | 101 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | DLX6-AS1_1.1-201 | ENST00000621599 | 180 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | ROCK2-203 | ENST00000401753 | 4017 nt | TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | EFR3A-202 | ENST00000519656 | 5247 nt | TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AC008505.1-204 | ENST00000637363 | 2714 nt | TSL 5 BASIC | 2.39 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | AL359693.1-201 | ENST00000614959 | 2407 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RNU6-1252P-201 | ENST00000363054 | 104 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | THNSL1-201 | ENST00000376356 | 3691 nt | APPRIS P1 TSL 1 (best) BASIC | 2.38 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | Y_RNA.530-201 | ENST00000384587 | 101 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | TRAJ40-201 | ENST00000390497 | 61 nt | APPRIS P1 BASIC | 2.38 | □□□□□ -2.03 | | |
| PAX8 | Q06710 | RPS4XP3-201 | ENST00000398541 | 413 nt | BASIC | 2.38 | □□□□□ -2.03 | | |