Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.48□□□□□ -2.17
FOXA1P55317 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.48□□□□□ -2.17
FOXA1P55317 MIR4782-201ENST00000577987 79 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.48□□□□□ -2.17
FOXA1P55317 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.48□□□□□ -2.17
FOXA1P55317 MTCYBP22-201ENST00000603788 447 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AC121334.2-201ENST00000605387 271 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AC027449.1-201ENST00000608890 407 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AL365204.3-201ENST00000612448 685 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AC091834.1-201ENST00000614543 472 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 MIR6134-201ENST00000617606 109 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 CDC27P3-201ENST00000635418 1910 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 AC092104.1-201ENST00000497346 1441 ntBASIC1.48□□□□□ -2.17
FOXA1P55317 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.47□□□□□ -2.17
FOXA1P55317 RNU5E-6P-201ENST00000365574 115 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 RNU6-898P-201ENST00000365627 104 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
FOXA1P55317 MIR1304-201ENST00000408243 91 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 RPS24P7-201ENST00000416921 246 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 RPL22P18-201ENST00000417197 377 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC098592.1-201ENST00000419352 333 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.47□□□□□ -2.17
FOXA1P55317 AL591212.2-201ENST00000433923 257 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.47□□□□□ -2.17
FOXA1P55317 RPL22P17-201ENST00000438729 315 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC118469.1-201ENST00000442943 488 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC1.47□□□□□ -2.17
FOXA1P55317 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.47□□□□□ -2.17
FOXA1P55317 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.47□□□□□ -2.17
FOXA1P55317 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC116655.1-201ENST00000508324 901 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA1P55317 AC091965.2-201ENST00000512324 613 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 SNORA25.11-201ENST00000515935 105 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 SNORA25.15-201ENST00000516487 89 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 MRPS36P3-201ENST00000519284 130 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 MTND4LP18-201ENST00000526864 291 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 CBX3P7-201ENST00000532876 502 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA1P55317 AL133241.1-201ENST00000556832 487 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 ZNF519P3-201ENST00000557158 1032 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.47□□□□□ -2.17
FOXA1P55317 MIR3118-1-201ENST00000581787 76 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AP000942.3-201ENST00000603702 160 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 BX248123.2-201ENST00000606318 124 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC022893.3-201ENST00000607665 437 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC130324.3-201ENST00000614165 542 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
FOXA1P55317 AC024581.2-201ENST00000619986 252 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 FRG1KP-201ENST00000623592 341 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC091953.2-201ENST00000623979 160 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC092192.1-201ENST00000633154 1018 ntBASIC1.47□□□□□ -2.17
FOXA1P55317 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
FOXA1P55317 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.46□□□□□ -2.18
FOXA1P55317 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.46□□□□□ -2.18
FOXA1P55317 RNU4-28P-201ENST00000364739 141 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 RNU6-1280P-201ENST00000365211 107 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 SNORA4.3-201ENST00000365564 137 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 RNU6-748P-201ENST00000384648 107 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 MIR1302-8-201ENST00000408342 128 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 SNORD56-201ENST00000413522 71 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 AC092809.3-201ENST00000415453 231 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 PGBD4P6-201ENST00000421501 610 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 RPS3AP44-201ENST00000425466 790 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC1.46□□□□□ -2.18
FOXA1P55317 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA1P55317 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA1P55317 ZNF736P12Y-201ENST00000443152 1243 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC1.46□□□□□ -2.18
FOXA1P55317 AC093899.1-201ENST00000457984 376 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 AL139824.2-201ENST00000458731 1095 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 AC023194.1-201ENST00000493084 308 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 SMURF2P1-201ENST00000514992 481 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 RNU6-914P-201ENST00000516749 109 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 RNU6-677P-201ENST00000516914 101 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 ACA59.2-201ENST00000517061 156 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 SNORA31.19-201ENST00000517079 126 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 RNU6-1315P-201ENST00000517187 99 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA1P55317 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA1P55317 AP003461.1-201ENST00000528866 78 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 LINC00933-203ENST00000559812 219 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA1P55317 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA1P55317 MIR3683-201ENST00000580847 82 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC1.46□□□□□ -2.18
FOXA1P55317 AC007229.1-201ENST00000590455 412 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.46□□□□□ -2.18
FOXA1P55317 AC007671.2-201ENST00000637344 619 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 AC008555.8-201ENST00000623602 2168 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.46□□□□□ -2.18
FOXA1P55317 TEX21P-201ENST00000447107 1476 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
FOXA1P55317 Z75746.1-201ENST00000440243 2080 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 RNU6-1214P-201ENST00000363650 109 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 RNU6-946P-201ENST00000383878 107 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 MIR518D-201ENST00000385014 87 ntBASIC1.45□□□□□ -2.18
FOXA1P55317 MIR301A-201ENST00000385261 86 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 159.2 ms