Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC098614.2-201ENST00000426040 255 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXA1P49639 AL078601.1-201ENST00000444542 271 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 Z96811.1-201ENST00000445880 108 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 HMGB1P30-201ENST00000492455 606 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXA1P49639 RPS27AP10-201ENST00000496103 208 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AC008526.1-201ENST00000509149 338 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 FCF1P8-201ENST00000510322 597 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AC092436.3-201ENST00000511788 257 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXA1P49639 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.68□□□□□ -1.98
HOXA1P49639 Y_RNA.691-201ENST00000516611 103 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 RNU6-566P-201ENST00000516790 107 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 RNU6-1183P-201ENST00000517054 60 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 RNA5SP454-201ENST00000517231 127 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXA1P49639 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXA1P49639 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXA1P49639 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXA1P49639 HMGN2P15-201ENST00000585707 270 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 ELOCP5-201ENST00000604924 333 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AC245389.1-201ENST00000605141 529 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AC064836.2-201ENST00000609491 462 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 MIR6798-201ENST00000612887 67 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 RMST_4.1-201ENST00000616886 107 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 AC073308.1-201ENST00000623696 305 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.68□□□□□ -1.98
HOXA1P49639 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXA1P49639 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA1P49639 AC009487.2-201ENST00000420969 6821 ntBASIC2.68□□□□□ -1.98
HOXA1P49639 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXA1P49639 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
HOXA1P49639 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA1P49639 Y_RNA.339-201ENST00000365325 102 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 RNU6-898P-201ENST00000365627 104 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 RNU1-73P-201ENST00000383971 164 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 Y_RNA.419-201ENST00000384041 102 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 RNU6-1013P-201ENST00000384180 107 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 Y_RNA.480-201ENST00000384364 102 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 RNU6-306P-201ENST00000384617 107 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 MIR181B1-201ENST00000385240 110 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 MT-TD-201ENST00000387419 68 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
HOXA1P49639 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
HOXA1P49639 MIR548K-201ENST00000408406 116 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXA1P49639 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXA1P49639 RPS3AP52-201ENST00000435639 297 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 AL590664.1-201ENST00000448065 339 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXA1P49639 AC010099.1-201ENST00000455434 375 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA1P49639 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXA1P49639 MTND5P5-201ENST00000503764 376 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXA1P49639 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXA1P49639 RPL39P5-202ENST00000512505 151 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 RN7SKP24-201ENST00000515888 284 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 RN7SKP43-201ENST00000516173 320 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 CYCSP27-201ENST00000527643 293 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 AC004486.1-201ENST00000546846 233 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 AL391261.3-201ENST00000557194 520 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 MIR3609-201ENST00000582661 80 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 AC023043.2-201ENST00000589678 1026 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 AC016727.1-205ENST00000605437 569 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 uc_338.1-201ENST00000612113 180 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA1P49639 MTND4LP32-201ENST00000636111 270 ntBASIC2.67□□□□□ -1.98
HOXA1P49639 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXA1P49639 RNU6-562P-201ENST00000362731 107 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 RNU4-79P-201ENST00000362764 141 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 Y_RNA.135-201ENST00000363439 95 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXA1P49639 SNORD116-11-201ENST00000383882 92 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 Y_RNA.535-201ENST00000384612 99 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 MIR554-201ENST00000384874 96 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 HMGN2P30-201ENST00000423237 256 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXA1P49639 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXA1P49639 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXA1P49639 BRK1P2-201ENST00000442875 223 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 AC034236.1-201ENST00000469891 373 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
HOXA1P49639 AC025518.1-201ENST00000479856 347 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 RPL21P13-201ENST00000488305 481 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 FGF7P4-201ENST00000509595 295 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 Y_RNA.687-201ENST00000516558 91 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 RNU6-703P-201ENST00000516946 107 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 HIGD1AP1-201ENST00000550979 275 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXA1P49639 OR1M4P-201ENST00000589199 287 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 AC020895.1-201ENST00000595362 272 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 AL121917.1-203ENST00000605534 577 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.66□□□□□ -1.98
HOXA1P49639 AL591516.1-201ENST00000611326 274 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 MIR6076-201ENST00000617521 113 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 AC091903.1-201ENST00000624322 454 ntBASIC2.66□□□□□ -1.98
HOXA1P49639 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms